Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LZI70_RS09625 Genome accession   NZ_CP090614
Coordinates   2117415..2118644 (-) Length   409 a.a.
NCBI ID   WP_255229933.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2112415..2123644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS09585 (LZI70_09570) rpsP 2112717..2112965 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  LZI70_RS09590 (LZI70_09575) rimM 2112993..2113547 (+) 555 WP_255229927.1 ribosome maturation factor RimM -
  LZI70_RS09595 (LZI70_09580) trmD 2113575..2114315 (+) 741 WP_255229928.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LZI70_RS09600 (LZI70_09585) rplS 2114375..2114728 (+) 354 WP_032549758.1 50S ribosomal protein L19 -
  LZI70_RS09605 (LZI70_09590) yacG 2114812..2115009 (-) 198 WP_255229929.1 DNA gyrase inhibitor YacG -
  LZI70_RS09610 (LZI70_09595) zapD 2115097..2115837 (-) 741 WP_255229930.1 cell division protein ZapD -
  LZI70_RS09615 (LZI70_09600) coaE 2115870..2116478 (-) 609 WP_255229931.1 dephospho-CoA kinase -
  LZI70_RS09620 (LZI70_09605) pilD 2116483..2117352 (-) 870 WP_255229932.1 prepilin peptidase Machinery gene
  LZI70_RS09625 (LZI70_09610) pilC 2117415..2118644 (-) 1230 WP_255229933.1 type II secretion system F family protein Machinery gene
  LZI70_RS09630 (LZI70_09615) pilB 2118691..2120376 (-) 1686 WP_255229934.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LZI70_RS09635 (LZI70_09620) pilA 2120376..2120831 (-) 456 WP_255229935.1 pilin Machinery gene
  LZI70_RS09640 (LZI70_09625) nadC 2121084..2121974 (-) 891 WP_255229936.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LZI70_RS09645 (LZI70_09630) ampD 2122121..2122669 (+) 549 WP_255229937.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45289.38 Da        Isoelectric Point: 10.4480

>NTDB_id=644007 LZI70_RS09625 WP_255229933.1 2117415..2118644(-) (pilC) [Vibrio pelagius strain WXL662]
MAIKPKQSQLKNYHWRGINSSGKRVSGQTLALTELEVRDKLREQHIQIKKIKKKSISALTRLTNQVKAKDITLLTRQLAT
MLGTGVPIIQAIKLVSDNHRKAEMKSILSQIRKGVEAGTPLSKAMRTASRHFDDLYTDLVATGELSGNLAEVFERLATYR
EKSAQLKSKVVKALIYPVMVVMTALLVSYLMLTKVIPEFESMFSGFGADLPWFTAKVMELSHWMQAYGFYTFVGLGAVTL
LFIQTRKRSYAIRLATSRIGLRIPIIGGVVAKASIAKFSRTLSTSFSSGIPILTSLRTTAKTTGNVHFESAITEVHKETA
AGMPMYIAMRNSQAFPEMVLQMVMIGEESGNLDDMLNKVATIYEFEVDNTVDNLGKILEPLIILFLGSVVGSLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=644007 LZI70_RS09625 WP_255229933.1 2117415..2118644(-) (pilC) [Vibrio pelagius strain WXL662]
ATGGCAATCAAACCTAAACAATCACAACTCAAGAATTATCACTGGAGAGGCATTAACAGCTCGGGAAAGAGAGTGTCAGG
GCAAACCTTGGCTCTTACTGAGCTAGAAGTCAGAGACAAGCTTCGCGAACAGCATATTCAGATCAAGAAGATAAAGAAAA
AAAGTATCTCCGCGCTCACTCGCCTAACAAATCAGGTCAAAGCAAAAGACATCACCCTGTTAACACGCCAGTTAGCAACC
ATGTTAGGAACCGGAGTTCCAATCATCCAAGCGATAAAACTGGTGTCAGATAACCATAGAAAAGCTGAGATGAAATCGAT
TTTGTCGCAGATACGCAAAGGCGTTGAAGCTGGAACCCCTTTATCAAAAGCGATGAGAACCGCAAGCCGCCATTTTGATG
ACTTGTATACCGACCTTGTCGCAACCGGAGAGCTGTCTGGAAACCTCGCAGAAGTATTTGAACGACTGGCGACCTACCGA
GAAAAGAGCGCGCAGCTCAAGTCAAAAGTGGTTAAAGCGCTGATTTACCCTGTGATGGTAGTAATGACAGCCTTATTGGT
TTCCTATCTGATGCTAACTAAAGTGATCCCAGAGTTCGAGTCCATGTTTTCAGGATTTGGTGCTGACTTGCCTTGGTTTA
CAGCTAAAGTCATGGAGCTGTCTCACTGGATGCAGGCCTACGGCTTCTATACCTTTGTTGGTTTGGGTGCAGTAACTCTA
CTCTTCATCCAGACTCGTAAACGATCTTATGCCATACGGCTTGCCACTAGCCGCATTGGCTTACGCATACCCATTATCGG
AGGTGTAGTCGCCAAGGCTTCGATAGCCAAATTCAGCCGCACGTTGTCAACCAGCTTCAGTTCTGGGATACCGATCCTGA
CAAGTCTTAGAACGACAGCCAAAACGACAGGTAACGTACACTTTGAATCCGCGATTACGGAAGTCCACAAAGAGACAGCT
GCAGGAATGCCAATGTATATTGCGATGCGCAATAGCCAAGCCTTCCCTGAAATGGTACTGCAGATGGTGATGATAGGCGA
AGAGTCTGGCAACCTTGATGATATGCTCAATAAAGTGGCGACGATCTATGAATTTGAGGTCGACAACACCGTCGATAATC
TGGGCAAGATCTTAGAACCACTGATCATCCTTTTTCTGGGATCTGTTGTAGGGAGCTTAGTGGTTGCGATGTACTTACCG
ATCTTTAACTTAATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

77.5

97.8

0.758
  pilC Vibrio campbellii strain DS40M4

70.223

98.533

0.692
  pilC Acinetobacter baumannii D1279779

42.054

100

0.421
  pilC Legionella pneumophila strain ERS1305867

41.814

97.066

0.406
  pilC Pseudomonas stutzeri DSM 10701

40.842

98.778

0.403
  pilC Acinetobacter baylyi ADP1

41.562

97.066

0.403
  pilG Neisseria meningitidis 44/76-A

40.852

97.555

0.399
  pilG Neisseria gonorrhoeae MS11

40.602

97.555

0.396