Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LZI70_RS09635 Genome accession   NZ_CP090614
Coordinates   2120376..2120831 (-) Length   151 a.a.
NCBI ID   WP_255229935.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2115376..2125831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS09615 (LZI70_09600) coaE 2115870..2116478 (-) 609 WP_255229931.1 dephospho-CoA kinase -
  LZI70_RS09620 (LZI70_09605) pilD 2116483..2117352 (-) 870 WP_255229932.1 prepilin peptidase Machinery gene
  LZI70_RS09625 (LZI70_09610) pilC 2117415..2118644 (-) 1230 WP_255229933.1 type II secretion system F family protein Machinery gene
  LZI70_RS09630 (LZI70_09615) pilB 2118691..2120376 (-) 1686 WP_255229934.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LZI70_RS09635 (LZI70_09620) pilA 2120376..2120831 (-) 456 WP_255229935.1 pilin Machinery gene
  LZI70_RS09640 (LZI70_09625) nadC 2121084..2121974 (-) 891 WP_255229936.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LZI70_RS09645 (LZI70_09630) ampD 2122121..2122669 (+) 549 WP_255229937.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LZI70_RS09650 (LZI70_09635) pdhR 2123117..2123884 (+) 768 WP_255229938.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 15842.11 Da        Isoelectric Point: 6.8998

>NTDB_id=644009 LZI70_RS09635 WP_255229935.1 2120376..2120831(-) (pilA) [Vibrio pelagius strain WXL662]
MKTRQTKQKGFTLIELMIVVAIIGILSAFAVPAYQDYTKKATLAEFPKAAAAVKLAVELCAHENASDSTTFKSNCITGSN
GVPSAALNAIAVTALGNVSGGVDVIAKATRDKGPIKTDEEYIMNASYTPSGIEWTTSCKDASGTVQDTYCP

Nucleotide


Download         Length: 456 bp        

>NTDB_id=644009 LZI70_RS09635 WP_255229935.1 2120376..2120831(-) (pilA) [Vibrio pelagius strain WXL662]
ATGAAAACAAGACAAACAAAGCAAAAAGGCTTTACGTTAATTGAATTGATGATTGTAGTGGCGATTATTGGGATTCTATC
GGCTTTTGCTGTACCTGCTTATCAAGACTATACAAAAAAAGCGACTCTAGCTGAATTTCCAAAAGCTGCGGCAGCGGTCA
AATTAGCTGTTGAGCTTTGTGCTCATGAAAACGCATCTGACTCAACAACATTTAAAAGTAATTGTATAACGGGGAGCAAT
GGCGTTCCATCAGCAGCTTTGAACGCCATTGCCGTCACTGCTTTAGGTAATGTATCAGGTGGCGTGGACGTAATTGCAAA
AGCAACCAGAGACAAAGGGCCAATTAAGACGGACGAGGAATATATAATGAATGCTTCGTACACGCCAAGTGGGATTGAGT
GGACTACGAGCTGTAAGGATGCATCAGGTACAGTACAAGATACATACTGCCCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio campbellii strain DS40M4

59.74

100

0.609
  pilA Haemophilus influenzae Rd KW20

42.466

96.689

0.411
  pilA Haemophilus influenzae 86-028NP

41.781

96.689

0.404