Detailed information NTG0644006

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LZI70_RS09620
• Genome accession: NZ_CP090614
• Coordinates: 2116483..2117352 (-)
• Length: 289 a.a.
• NCBI ID: WP_255229932.1
• Uniprot ID: -
• Organism: Vibrio pelagius strain WXL662
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2111483..2122352

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZI70_RS09585 (LZI70_09570)	rpsP	2112717..2112965 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
LZI70_RS09590 (LZI70_09575)	rimM	2112993..2113547 (+)	555	WP_255229927.1	ribosome maturation factor RimM	-
LZI70_RS09595 (LZI70_09580)	trmD	2113575..2114315 (+)	741	WP_255229928.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LZI70_RS09600 (LZI70_09585)	rplS	2114375..2114728 (+)	354	WP_032549758.1	50S ribosomal protein L19	-
LZI70_RS09605 (LZI70_09590)	yacG	2114812..2115009 (-)	198	WP_255229929.1	DNA gyrase inhibitor YacG	-
LZI70_RS09610 (LZI70_09595)	zapD	2115097..2115837 (-)	741	WP_255229930.1	cell division protein ZapD	-
LZI70_RS09615 (LZI70_09600)	coaE	2115870..2116478 (-)	609	WP_255229931.1	dephospho-CoA kinase	-
LZI70_RS09620 (LZI70_09605)	pilD	2116483..2117352 (-)	870	WP_255229932.1	prepilin peptidase	Machinery gene
LZI70_RS09625 (LZI70_09610)	pilC	2117415..2118644 (-)	1230	WP_255229933.1	type II secretion system F family protein	Machinery gene
LZI70_RS09630 (LZI70_09615)	pilB	2118691..2120376 (-)	1686	WP_255229934.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LZI70_RS09635 (LZI70_09620)	pilA	2120376..2120831 (-)	456	WP_255229935.1	pilin	Machinery gene
LZI70_RS09640 (LZI70_09625)	nadC	2121084..2121974 (-)	891	WP_255229936.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32645.94 Da
• Isoelectric Point: 7.6097

>NTDB_id=644006 LZI70_RS09620 WP_255229932.1 2116483..2117352(-) (pilD) [Vibrio pelagius strain WXL662]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMQREWQQECSESFPDYKIPMPKGTYNLSVPRSTCPKCETQIRVI
DNIPVFSWLVLKGKCRQCSNPISPRYPLVELLTAVMCSFVAAHFGFGYYTIALIFFTFALISATFIDLDTMLLPDQITLP
LVWSGIALALFGISPITLQDSVIGAMVGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWISLIWGENIMAWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=644006 LZI70_RS09620 WP_255229932.1 2116483..2117352(-) (pilD) [Vibrio pelagius strain WXL662]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTTATCTTCAGCCTACTTATCGGTAGTTTTCTCAA
CGTCGTTATCCATCGTTTGCCAATTATGATGCAACGAGAATGGCAGCAAGAGTGCTCTGAAAGCTTCCCTGATTACAAGA
TTCCGATGCCAAAGGGGACATACAACCTCAGCGTACCCCGTTCAACCTGCCCGAAATGTGAAACGCAGATTCGAGTCATC
GATAATATTCCAGTATTCAGTTGGTTGGTTTTGAAAGGCAAATGTCGACAGTGTTCGAATCCTATCAGCCCTCGCTACCC
TTTGGTTGAGCTACTCACTGCGGTGATGTGTAGCTTCGTTGCGGCGCATTTTGGTTTCGGTTACTACACAATCGCACTGA
TCTTTTTTACCTTTGCCTTAATATCAGCGACCTTCATCGACCTCGATACCATGCTACTGCCCGATCAAATCACGCTACCA
TTGGTCTGGTCAGGTATTGCGCTTGCGCTGTTTGGCATCAGCCCTATCACCCTTCAAGACTCAGTCATAGGAGCAATGGT
TGGCTACTTAGCGCTATGGTCAGTCTACTGGCTATTCAAACTCCTAACGGGCAAAGAGGGCATGGGCTATGGTGATTTCA
AACTTCTTGCCGCATTAGGGGCTTGGCTTGGTTGGCAACACCTACCCATGATCATTTTGCTCTCTTCGCTGGTTGGCCTC
GTGTTTGGCTTAATTCAGCTGCGATTGAAACAGCAAGGCATCGACAAAGCCTTCCCTTTTGGTCCTTATCTCGCCATTGC
CGGTTGGATCAGTCTAATTTGGGGCGAGAACATTATGGCTTGGTATTTTACTTCGGTTTTAGGAATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	75.087	100	0.751
pilD	Vibrio cholerae strain A1552	68.403	99.654	0.682
pilD	Acinetobacter baumannii D1279779	51.471	94.118	0.484
pilD	Acinetobacter nosocomialis M2	51.471	94.118	0.484
pilD	Neisseria gonorrhoeae MS11	46.35	94.81	0.439