Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IHC88_RS14975 Genome accession   NZ_CP090498
Coordinates   3241369..3242463 (-) Length   364 a.a.
NCBI ID   WP_237033238.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain CSP DAM2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3236369..3247463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC88_RS14945 (IHC88_14945) hemF 3236882..3237793 (-) 912 WP_065171017.1 oxygen-dependent coproporphyrinogen oxidase -
  IHC88_RS14950 (IHC88_14950) - 3237797..3238354 (-) 558 WP_044178827.1 L-threonylcarbamoyladenylate synthase -
  IHC88_RS14955 (IHC88_14955) purE 3238548..3239033 (+) 486 WP_237033236.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IHC88_RS14960 (IHC88_14960) - 3239036..3240157 (+) 1122 WP_237033237.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IHC88_RS14965 (IHC88_14965) - 3240225..3240782 (-) 558 WP_005302142.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  IHC88_RS14970 (IHC88_14970) - 3240893..3241366 (-) 474 WP_036764597.1 DUF494 family protein -
  IHC88_RS14975 (IHC88_14975) dprA 3241369..3242463 (-) 1095 WP_237033238.1 DNA-processing protein DprA Machinery gene
  IHC88_RS14980 (IHC88_14980) - 3242466..3243524 (-) 1059 WP_237033239.1 LysM peptidoglycan-binding domain-containing protein -
  IHC88_RS14985 (IHC88_14985) def 3243813..3244325 (+) 513 WP_044178811.1 peptide deformylase -
  IHC88_RS14990 (IHC88_14990) fmt 3244338..3245282 (+) 945 WP_237033240.1 methionyl-tRNA formyltransferase -
  IHC88_RS14995 (IHC88_14995) rsmB 3245421..3246698 (+) 1278 WP_237033241.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39152.15 Da        Isoelectric Point: 6.4262

>NTDB_id=642956 IHC88_RS14975 WP_237033238.1 3241369..3242463(-) (dprA) [Photobacterium damselae subsp. damselae strain CSP DAM2]
MDNTHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVAAIKHPDNKKIDLALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDSQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAASIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAIPGSIYNPASRGCNALIKSGAKLVESAQDIFEEVGALTECAINHQLSQALPETENEQLPFPELLATVGSE
VIPVDVLAERSQMPVHDVMTQLLELELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=642956 IHC88_RS14975 WP_237033238.1 3241369..3242463(-) (dprA) [Photobacterium damselae subsp. damselae strain CSP DAM2]
ATGGACAATACCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGCCACCGTATCAGTCGTTTATTACAACA
CGCAATGCCAGAGCAAATTATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTTGCCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTTGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTTTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGTGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTAGGCATCGATAGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACCATTGCCGTTTTAGGTTCCGGGCTGGAGCAGATTTATCCCGCATGCCACAAATCGTTAGCTGCAAG
TATTGTTGAGCAGGGTGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGAGCCCAATTTTTTCCACGTAGAAACC
GGATTATTAGCGGTTTATCTGTTGGAGTATTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAGCAAGGCCGAGAAGTCTTTGCTATACCTGGTTCTATTTATAATCCCGCCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCAAGATATTTTCGAGGAGGTAGGAGCCCTAACAGAATGCGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCGAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCATGATGTCATGACGCAATTATTAGAATTAGAATT
GCTCGGATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

56.389

98.901

0.558
  dprA Vibrio cholerae strain A1552

52

100

0.536
  dprA Glaesserella parasuis strain SC1401

48.098

100

0.486
  dprA Legionella pneumophila strain ERS1305867

43.631

100

0.442
  dprA Haemophilus influenzae Rd KW20

46.313

93.132

0.431
  dprA Neisseria meningitidis strain C311

44.237

88.187

0.39
  dprA Neisseria meningitidis MC58

44.237

88.187

0.39
  dprA Acinetobacter baumannii strain A118

42.901

89.011

0.382
  dprA Neisseria gonorrhoeae MS11

43.26

87.637

0.379
  dprA Neisseria gonorrhoeae strain FA1090

42.633

87.637

0.374
  dprA Acinetobacter baylyi ADP1

45.27

81.319

0.368