Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LZP85_RS18375 | Genome accession | NZ_CP090431 |
| Coordinates | 3567024..3567368 (-) | Length | 114 a.a. |
| NCBI ID | WP_025908776.1 | Uniprot ID | A0A8I1MIH1 |
| Organism | Priestia flexa strain DMP08 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3562024..3572368
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZP85_RS18365 (LZP85_18365) | - | 3563002..3565611 (+) | 2610 | WP_407681858.1 | SNF2-related protein | - |
| LZP85_RS18370 (LZP85_18370) | - | 3565777..3566844 (+) | 1068 | WP_119543777.1 | LysM peptidoglycan-binding domain-containing protein | - |
| LZP85_RS18375 (LZP85_18375) | ssbB | 3567024..3567368 (-) | 345 | WP_025908776.1 | single-stranded DNA-binding protein | Machinery gene |
| LZP85_RS18380 (LZP85_18380) | - | 3567490..3567957 (+) | 468 | WP_119543779.1 | YwpF family protein | - |
| LZP85_RS18385 (LZP85_18385) | - | 3568425..3568847 (+) | 423 | WP_025908774.1 | helix-turn-helix transcriptional regulator | - |
| LZP85_RS18390 (LZP85_18390) | - | 3568881..3569153 (-) | 273 | WP_206782896.1 | hypothetical protein | - |
| LZP85_RS18395 (LZP85_18395) | - | 3569279..3570103 (-) | 825 | WP_234561858.1 | flagellar hook-basal body protein | - |
| LZP85_RS18400 (LZP85_18400) | - | 3570135..3570950 (-) | 816 | WP_234561860.1 | flagellar hook-basal body protein | - |
| LZP85_RS18405 (LZP85_18405) | - | 3571065..3572066 (-) | 1002 | WP_206782893.1 | rod shape-determining protein | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 13005.79 Da Isoelectric Point: 7.9924
>NTDB_id=642390 LZP85_RS18375 WP_025908776.1 3567024..3567368(-) (ssbB) [Priestia flexa strain DMP08]
MINEVVLVGRLTRVPELKYTSEGIPFSHITVAVNRNFRNQEGEVEADFVSITLWRKNAENMTKYCDKGSIIGVVGRVQTR
TFENNLQQRVYVTDIIAEYVRFLSGKPSSPENQP
MINEVVLVGRLTRVPELKYTSEGIPFSHITVAVNRNFRNQEGEVEADFVSITLWRKNAENMTKYCDKGSIIGVVGRVQTR
TFENNLQQRVYVTDIIAEYVRFLSGKPSSPENQP
Nucleotide
Download Length: 345 bp
>NTDB_id=642390 LZP85_RS18375 WP_025908776.1 3567024..3567368(-) (ssbB) [Priestia flexa strain DMP08]
TTGATTAATGAAGTAGTGCTAGTAGGGCGTTTGACACGAGTTCCTGAACTGAAATATACATCCGAAGGAATTCCTTTTTC
CCATATTACAGTAGCTGTGAACAGAAACTTTCGTAACCAGGAAGGAGAAGTGGAAGCTGATTTTGTATCAATTACGTTAT
GGAGAAAAAACGCTGAAAACATGACGAAATACTGCGATAAGGGATCGATTATAGGAGTCGTAGGACGTGTGCAAACGCGT
ACGTTTGAAAACAATTTGCAGCAGCGTGTTTATGTGACAGATATTATCGCAGAATACGTTCGGTTTTTAAGCGGTAAGCC
TTCCTCACCTGAAAATCAGCCATGA
TTGATTAATGAAGTAGTGCTAGTAGGGCGTTTGACACGAGTTCCTGAACTGAAATATACATCCGAAGGAATTCCTTTTTC
CCATATTACAGTAGCTGTGAACAGAAACTTTCGTAACCAGGAAGGAGAAGTGGAAGCTGATTTTGTATCAATTACGTTAT
GGAGAAAAAACGCTGAAAACATGACGAAATACTGCGATAAGGGATCGATTATAGGAGTCGTAGGACGTGTGCAAACGCGT
ACGTTTGAAAACAATTTGCAGCAGCGTGTTTATGTGACAGATATTATCGCAGAATACGTTCGGTTTTTAAGCGGTAAGCC
TTCCTCACCTGAAAATCAGCCATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.009 |
93.86 |
0.535 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
92.982 |
0.509 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
47.788 |
99.123 |
0.474 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.991 |
93.86 |
0.404 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.991 |
93.86 |
0.404 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.056 |
93.86 |
0.395 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.056 |
93.86 |
0.395 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.056 |
93.86 |
0.395 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.056 |
93.86 |
0.395 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.056 |
93.86 |
0.395 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
43.75 |
84.211 |
0.368 |