Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LZG54_RS12170 Genome accession   NZ_CP090382
Coordinates   2535428..2536654 (+) Length   408 a.a.
NCBI ID   WP_004975864.1    Uniprot ID   A0A2A5PJ18
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2530428..2541654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS12130 (LZG54_12145) rimP 2530734..2531258 (-) 525 WP_234114088.1 ribosome maturation factor RimP -
  LZG54_RS12155 (LZG54_12170) secG 2532273..2532602 (-) 330 WP_004975868.1 preprotein translocase subunit SecG -
  LZG54_RS12160 (LZG54_12175) tpiA 2532616..2533407 (-) 792 WP_234114089.1 triose-phosphate isomerase -
  LZG54_RS12165 (LZG54_12180) pilB 2533685..2535397 (+) 1713 WP_234114090.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LZG54_RS12170 (LZG54_12185) pilC 2535428..2536654 (+) 1227 WP_004975864.1 type II secretion system F family protein Machinery gene
  LZG54_RS14710 pilD 2536654..2537514 (+) 861 WP_267970595.1 prepilin peptidase Machinery gene
  LZG54_RS12185 (LZG54_12200) coaE 2537524..2538123 (+) 600 WP_004975860.1 dephospho-CoA kinase -
  LZG54_RS12190 (LZG54_12205) - 2538129..2539007 (-) 879 WP_234115030.1 DMT family transporter -
  LZG54_RS12195 (LZG54_12210) rlmB 2539102..2539851 (-) 750 WP_234114091.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LZG54_RS12200 (LZG54_12215) - 2540039..2540362 (-) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44996.52 Da        Isoelectric Point: 9.9487

>NTDB_id=641889 LZG54_RS12170 WP_004975864.1 2535428..2536654(+) (pilC) [Acinetobacter towneri strain SCLZS30]
MAVKKAQMMPTFVYEGIDRKGAKLKGEIPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKRVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWMQKYWFILIIVIGVIIA
GFLETKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIRDDVA
TGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=641889 LZG54_RS12170 WP_004975864.1 2535428..2536654(+) (pilC) [Acinetobacter towneri strain SCLZS30]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTCGTTTATGAAGGGATTGACCGCAAAGGGGCTAAGTTAAAAGGGGA
AATTCCAGCGCGTAATATGGCCTTGGCAAAGGTCACATTGCGTAAACAAGGGATTACCATCAAGACGATTCGCCAAAAGA
AAAAGAATATTCTTGAAGGCTTAATGAAAAAACGGGTGTCGACCTTAGACATCACTATTTTCACGCGTCAGCTTGCCACT
ATGATGAAAGCAGGTGTGCCTTTGGTACAAAGCTTTGAGATTGTTGCCGAAGGTCTTGAAAACCCCGCCATGCGTGAAGT
GGTTTTAGGCATTAAAGGTGAAGTGGAAGGCGGGAATACCTTTGCTGGCGCATTGCGTAAATATCCTCAATATTTTGACA
ACCTATTTTGTTCTTTGGTCGAGTCTGGTGAACAATCGGGTGCCCTAGAAACCATGCTAGATCGTGTCGCGATCTATAAA
GAAAAGAGTGAGTTACTCAAACAAAAAATTAAAAAAGCCATGAAATACCCTGCAACGGTCATTGTGGTGGCCGTGATTGT
GACCATTATTTTGATGGTGAAAGTCGTACCTGTGTTTGAAGAGTTGTTTAGCTCTTTTGGTGCGGACTTGCCTGCCTTCA
CTAAAATGGTGGTGAACATGTCACAATGGATGCAGAAATACTGGTTTATTCTGATTATTGTGATTGGGGTCATCATTGCA
GGTTTCTTGGAAACTAAAAAACGCAGTAAAAAATTCCGTGACTTCTTAGACAAAGCGGCACTGAAAGCGCCTATTTTTGG
TGACTTGGTCTATAAAGCGATTATTGCACGTTATAGCCGTACTTTAGCCACTACTTTTGCTGCTGGTGTACCCTTAATTG
ATGCCTTGGAATCTACCGCTGGGGCAACCAATAATGTGGTCTATGAAGAAGCCGTGATGAAAATTCGTGATGATGTTGCG
ACAGGTCAACAGCTACAATTCGCCATGCGTGTCACCAATAAATTTCCCTCTATGGCAGTGCAAATGGTAGCCATTGGTGA
AGAATCAGGTGCGCTAGATGCCATGCTAGATAAAGTCGCAACCCACTATGAAAACGAAGTCGACAACGCAGTAGATGGCT
TAACCTCAATGATGGAGCCGTTGATTATGTCTGTCTTGGGTATTTTAGTGGGTGGTTTAGTTGTCGCCATGTACCTTCCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A5PJ18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.99

100

0.88
  pilC Acinetobacter baylyi ADP1

83.578

100

0.836
  pilC Pseudomonas stutzeri DSM 10701

59.606

99.51

0.593
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.627

100

0.436
  pilC Vibrio campbellii strain DS40M4

42.079

99.02

0.417
  pilC Thermus thermophilus HB27

36.79

99.265

0.365