Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LZG54_RS14710 Genome accession   NZ_CP090382
Coordinates   2536654..2537514 (+) Length   286 a.a.
NCBI ID   WP_267970595.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2531654..2542514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS12155 (LZG54_12170) secG 2532273..2532602 (-) 330 WP_004975868.1 preprotein translocase subunit SecG -
  LZG54_RS12160 (LZG54_12175) tpiA 2532616..2533407 (-) 792 WP_234114089.1 triose-phosphate isomerase -
  LZG54_RS12165 (LZG54_12180) pilB 2533685..2535397 (+) 1713 WP_234114090.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LZG54_RS12170 (LZG54_12185) pilC 2535428..2536654 (+) 1227 WP_004975864.1 type II secretion system F family protein Machinery gene
  LZG54_RS14710 pilD 2536654..2537514 (+) 861 WP_267970595.1 prepilin peptidase Machinery gene
  LZG54_RS12185 (LZG54_12200) coaE 2537524..2538123 (+) 600 WP_004975860.1 dephospho-CoA kinase -
  LZG54_RS12190 (LZG54_12205) - 2538129..2539007 (-) 879 WP_234115030.1 DMT family transporter -
  LZG54_RS12195 (LZG54_12210) rlmB 2539102..2539851 (-) 750 WP_234114091.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LZG54_RS12200 (LZG54_12215) - 2540039..2540362 (-) 324 WP_004975854.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32063.50 Da        Isoelectric Point: 8.4469

>NTDB_id=641900 LZG54_RS14710 WP_267970595.1 2536654..2537514(+) (pilD) [Acinetobacter towneri strain SCLZS30]
MQELIAYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRNDCQMLLHPEQAIIDESKITLSKPASTCPKCHHP
IRWYQNIPVLSWLVLRGKCSNCQNLISVRYPMIEVLTAVCALVVLAVFGPTVQMLFGLLLTYTLIALTFIDFDTQLLPDR
YTLPLAALGLAVNSYAIYTSPTSAIWGYVIGFLCLWVVYYLFKIITGKEGMGYGDFKLLAALGAWMGPMMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGKQIMKVYLGQ

Nucleotide


Download         Length: 861 bp        

>NTDB_id=641900 LZG54_RS14710 WP_267970595.1 2536654..2537514(+) (pilD) [Acinetobacter towneri strain SCLZS30]
ATGCAAGAATTAATCGCGTACTTTATCCAAAATCCAACTGCGCTCTATATCGCAGTTGGACTTTTTAGTTTATGTATTGG
CAGTTTTTTGAATGTGGTGATTTACCGCACCCCAAAAATGATGGAACAGGAGTGGCGTAATGACTGCCAAATGTTATTAC
ATCCTGAACAAGCCATTATTGATGAAAGTAAAATCACCCTGAGCAAACCTGCATCGACCTGCCCCAAATGTCACCACCCA
ATTCGTTGGTATCAAAATATTCCTGTGCTGAGTTGGTTGGTATTACGCGGTAAATGTAGCAACTGCCAAAACCTGATCAG
CGTACGTTATCCAATGATTGAAGTATTAACCGCTGTTTGCGCCTTAGTTGTGCTTGCGGTATTTGGCCCAACTGTACAAA
TGCTGTTTGGTTTGCTGCTCACTTATACCTTGATTGCACTCACCTTCATTGATTTTGATACACAACTCTTGCCAGACCGT
TACACCTTGCCTTTGGCTGCACTGGGTTTGGCGGTTAACAGCTATGCCATCTATACTTCACCGACATCGGCAATTTGGGG
CTATGTGATTGGCTTCCTGTGCCTGTGGGTGGTGTATTACCTATTTAAAATCATCACAGGCAAAGAAGGCATGGGCTATG
GTGACTTTAAGCTCCTTGCCGCTTTAGGTGCATGGATGGGGCCAATGATGTTGCCGTTGATTGTGCTGCTTTCTTCCTTA
GTTGGGGCGATTATTGGCATTATTCTGTTAAAAGTGCGTAAAGAAAACCAACCCTTCGCGTTTGGTCCGTATATCGCCAT
TGCGGGTTGGATTGCCTTTTTATGGGGTAAACAAATCATGAAAGTATATTTGGGACAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

81.053

99.65

0.808
  pilD Acinetobacter baumannii D1279779

80.702

99.65

0.804
  pilD Vibrio cholerae strain A1552

55.597

93.706

0.521
  pilD Vibrio campbellii strain DS40M4

52.788

94.056

0.497
  pilD Neisseria gonorrhoeae MS11

47.547

92.657

0.441