Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LZG54_RS01230 Genome accession   NZ_CP090382
Coordinates   260146..262287 (+) Length   713 a.a.
NCBI ID   WP_234114976.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 255146..267287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS01210 (LZG54_01210) pilM 257164..258222 (+) 1059 WP_179991402.1 pilus assembly protein PilM Machinery gene
  LZG54_RS01215 (LZG54_01215) pilN 258222..258857 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  LZG54_RS01220 (LZG54_01220) comO 258854..259561 (+) 708 WP_234114355.1 type 4a pilus biogenesis protein PilO Machinery gene
  LZG54_RS01225 (LZG54_01225) pilP 259561..260085 (+) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  LZG54_RS01230 (LZG54_01230) pilQ 260146..262287 (+) 2142 WP_234114976.1 type IV pilus secretin PilQ Machinery gene
  LZG54_RS01235 (LZG54_01235) aroK 262325..262855 (+) 531 WP_234114356.1 shikimate kinase AroK -
  LZG54_RS01240 (LZG54_01240) aroB 262886..263965 (+) 1080 WP_234114357.1 3-dehydroquinate synthase -
  LZG54_RS01245 (LZG54_01245) - 263976..264821 (+) 846 WP_234114358.1 hypothetical protein -

Sequence

Protein


Download         Length: 713 a.a.        Molecular weight: 76907.93 Da        Isoelectric Point: 5.2308

>NTDB_id=641866 LZG54_RS01230 WP_234114976.1 260146..262287(+) (pilQ) [Acinetobacter towneri strain SCLZS30]
MNNLFRQFSMGAVAMAVMQVANAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPAAYQLEQPSRLILDFDKAQQTLKQNSV
AVATKEASSVEVSSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSTTATPVAAVTAQRSAQGVSNIGFQRGGEGEGQVV
IDLLGSNTPVDVQQQGSKIVVRTLGNKVPTHLARRLNVNDFATPVSTIDAHNDGSNGVITIQAAGSYEYMAYQAEDKLTI
SLKRPVDKNPFKPRAAQSYTGKKISLDFQDIEVRRVLQLLADFTGVNMVAADTVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIQLNYAKASDIEKLITDGKNASNSRSGSNTSSGADPLGD
SVGSLLSPRGTVSVDPRTNTLIINDTSAKIDQIRQMIDLLDVSVKQVMIEARIVRATTDFTKEMGVKWGILSQGITNNNH
LLVGGSDTTLWNLREPEKDDDTGGWKYEIERPQNLNVDLGVTSAGASRIAFGLISLSDFMLDLELSALQADGYGEVISTP
KILTADKQNAKVASGTQIPYQSSEGGGVNAVSTTEFIDATLSLDVTPSITPDGKVQMQLNITSDSPGAATPTGQLTINKN
AVNTNVLVDNGETVVLGGIFEQQTANSQTKVPFLGDIPYIGRLFRKDVKSENKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2142 bp        

>NTDB_id=641866 LZG54_RS01230 WP_234114976.1 260146..262287(+) (pilQ) [Acinetobacter towneri strain SCLZS30]
ATGAACAATTTGTTCCGTCAGTTTTCAATGGGCGCAGTCGCAATGGCAGTGATGCAAGTTGCCAATGCCCAAGTCAGCAT
TACCAACATCGTACCCATGCAAATTCCGGGACAGGGCACCGAAATTCGTGTCATGTTTAATGGTTTGCCACCTCAACCTG
CAGCATATCAGCTGGAACAACCTTCCCGCTTGATTTTAGATTTTGATAAAGCGCAACAAACGCTTAAGCAAAACAGCGTT
GCAGTCGCGACCAAAGAAGCCAGCTCTGTAGAGGTCAGCTCAGATGCACAGCGTTCACGTTTAACTGTGAACTTGGCCGA
TGCGGGCGCATTTACCACGCGTGTTGAAGGCAACACCTTTATTTTAAAAATCAACTCAACAACGGCAACCCCTGTGGCTG
CCGTGACTGCCCAACGTAGTGCGCAAGGTGTATCCAATATTGGTTTCCAGCGTGGCGGTGAAGGCGAAGGTCAGGTGGTG
ATTGATCTACTCGGTAGCAATACGCCTGTAGATGTGCAGCAGCAAGGCAGCAAAATTGTGGTGCGTACTTTAGGCAATAA
AGTACCAACACATTTGGCACGCCGTTTAAATGTAAATGACTTTGCAACACCTGTGTCGACCATTGATGCACATAATGATG
GTAGCAATGGCGTGATTACCATTCAAGCTGCAGGCAGCTATGAATATATGGCATATCAGGCAGAAGACAAGCTAACCATC
AGCTTAAAACGCCCTGTCGATAAAAACCCGTTTAAACCGCGTGCAGCGCAAAGCTACACAGGTAAAAAGATTTCATTGGA
CTTCCAAGATATCGAAGTGCGTCGTGTATTGCAGTTACTGGCTGATTTCACAGGCGTAAACATGGTGGCTGCAGACACCG
TACAAGGTAATATCACCTTACGTTTAAAAGATGTGCCTTGGGATCAAGCCTTAGACATTATCTTGAAAACCAAAAATTTA
GACAAGCGCCGTAATGGTAATGTGATCTGGATTGCGCCAGTTTCTGAGTTGATTAAGGCGGAAGAAGAAGAAGCCAAAGC
GATTGCACAAAGTGTTAAATTGGCACCACTGCAAACTGAATATATTCAGTTGAACTATGCTAAAGCTTCAGATATTGAGA
AGCTTATTACCGACGGTAAAAACGCTTCTAACTCACGCAGTGGTTCCAACACAAGTTCTGGAGCTGACCCATTAGGTGAT
AGCGTGGGGAGCTTGCTCAGCCCACGTGGTACAGTGTCGGTAGATCCACGTACCAATACCTTAATCATTAACGATACATC
GGCAAAAATTGATCAGATTCGTCAAATGATTGATTTGCTCGATGTGTCTGTGAAGCAGGTGATGATTGAAGCACGTATTG
TCCGTGCAACCACAGATTTCACCAAAGAAATGGGGGTGAAGTGGGGCATCTTGTCACAAGGGATTACCAACAATAATCAC
TTGTTAGTCGGTGGTAGTGATACGACCTTGTGGAACTTGCGTGAACCAGAAAAAGATGATGATACGGGTGGTTGGAAGTA
TGAAATTGAACGTCCGCAAAACCTGAATGTCGATTTAGGAGTGACCAGTGCAGGTGCTAGCCGCATTGCCTTTGGTTTAA
TCAGTTTGTCTGACTTTATGCTAGATTTGGAATTGTCTGCATTACAAGCCGATGGTTACGGTGAAGTGATTTCGACACCA
AAAATCCTGACTGCAGATAAGCAAAATGCAAAAGTCGCATCGGGTACTCAAATTCCGTATCAATCTTCTGAGGGTGGAGG
TGTCAATGCGGTATCGACCACCGAATTTATTGATGCGACTTTAAGTCTGGATGTGACTCCAAGTATAACACCTGATGGTA
AAGTTCAAATGCAATTAAATATCACCAGTGACTCACCAGGTGCAGCAACACCTACAGGTCAGCTCACCATTAACAAGAAC
GCCGTGAATACCAACGTTTTGGTGGACAATGGTGAAACTGTAGTCTTGGGGGGTATTTTTGAGCAACAAACGGCTAACTC
TCAAACCAAGGTTCCATTCTTGGGCGATATTCCTTATATCGGACGTTTATTCCGTAAAGATGTTAAGTCGGAAAACAAAC
GTGAGTTGCTGATTTTTGTTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(360-446)

Bacterial type II and III secretion system protein (Secretin)

(547-705)

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(40-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

76.519

100

0.777
  pilQ Acinetobacter baumannii strain A118

76.381

100

0.776
  comQ Acinetobacter baylyi ADP1

73.706

100

0.739
  pilQ Pseudomonas aeruginosa PAK

39.802

99.018

0.394
  pilQ Legionella pneumophila strain ERS1305867

37.482

99.158

0.372
  pilQ Legionella pneumophila strain Lp02

37.482

99.158

0.372