Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LZG54_RS01215 Genome accession   NZ_CP090382
Coordinates   258222..258857 (+) Length   211 a.a.
NCBI ID   WP_004974461.1    Uniprot ID   A0AAP4M279
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 253222..263857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS01200 (LZG54_01200) - 253569..254372 (+) 804 WP_234114353.1 putative RNA methyltransferase -
  LZG54_RS01205 (LZG54_01205) ponA 254442..256994 (-) 2553 WP_234114354.1 penicillin-binding protein PBP1a -
  LZG54_RS01210 (LZG54_01210) pilM 257164..258222 (+) 1059 WP_179991402.1 pilus assembly protein PilM Machinery gene
  LZG54_RS01215 (LZG54_01215) pilN 258222..258857 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  LZG54_RS01220 (LZG54_01220) comO 258854..259561 (+) 708 WP_234114355.1 type 4a pilus biogenesis protein PilO Machinery gene
  LZG54_RS01225 (LZG54_01225) pilP 259561..260085 (+) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  LZG54_RS01230 (LZG54_01230) pilQ 260146..262287 (+) 2142 WP_234114976.1 type IV pilus secretin PilQ Machinery gene
  LZG54_RS01235 (LZG54_01235) aroK 262325..262855 (+) 531 WP_234114356.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23682.07 Da        Isoelectric Point: 6.4746

>NTDB_id=641863 LZG54_RS01215 WP_004974461.1 258222..258857(+) (pilN) [Acinetobacter towneri strain SCLZS30]
MAKINLLPWRDELREKRKKEFIVFCIAAAAVGVLLVALAWFFYNAKLQDQEQANQLVISTNQNLDVQLKSLEGLQEQRNA
IVERMKLIQGLQSQRPIAVRLVDELVRVTPSNMYLTKVSRTGNKFTFEGKAESPNTVAEFLRNLEASPWYRNAFMNSFLA
KEENKDKAPSSVVPRVEESYGTFVVTSDLEEIAIPVTPTESNSTSAAGAAQ

Nucleotide


Download         Length: 636 bp        

>NTDB_id=641863 LZG54_RS01215 WP_004974461.1 258222..258857(+) (pilN) [Acinetobacter towneri strain SCLZS30]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAGAAAAACGTAAAAAAGAATTTATTGTATTTTGTATTGC
AGCGGCTGCTGTTGGGGTGTTATTGGTGGCTTTGGCGTGGTTCTTCTACAACGCGAAGTTACAAGATCAAGAACAAGCCA
ATCAATTGGTGATCAGTACCAACCAAAACCTAGATGTACAATTAAAATCTTTAGAAGGCTTGCAAGAACAGCGTAATGCT
ATTGTTGAGCGCATGAAGTTAATTCAGGGCTTACAAAGTCAGCGTCCAATTGCCGTGCGTTTGGTGGATGAATTGGTGCG
TGTGACACCAAGCAATATGTACTTAACCAAAGTGAGCCGTACAGGCAATAAATTCACTTTTGAAGGCAAGGCTGAAAGTC
CAAATACTGTGGCTGAATTCTTGCGTAATTTGGAAGCATCGCCGTGGTATCGCAATGCATTTATGAATTCATTCTTAGCC
AAAGAAGAAAATAAAGATAAAGCACCAAGCTCTGTGGTTCCTCGTGTAGAGGAAAGTTACGGTACTTTTGTAGTAACTTC
AGATTTAGAAGAAATTGCAATTCCAGTAACACCAACAGAATCTAATTCAACATCAGCAGCGGGGGCAGCACAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

70.283

100

0.706
  comN Acinetobacter baylyi ADP1

71.078

96.682

0.687