Detailed information NTG0641864

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OGM38_RS17070
• Genome accession: NZ_CP107164
• Coordinates: 3462794..3463819 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain R9
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3457794..3468819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM38_RS17040 (OGM38_17015)	zapB	3457878..3458123 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
OGM38_RS17045 (OGM38_17020)	rraA	3458208..3458693 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OGM38_RS17050 (OGM38_17025)	menA	3458786..3459712 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OGM38_RS17055 (OGM38_17030)	hslU	3459779..3461110 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OGM38_RS17060 (OGM38_17035)	hslV	3461120..3461650 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OGM38_RS17065 (OGM38_17040)	ftsN	3461743..3462702 (-)	960	WP_000068834.1	cell division protein FtsN	-
OGM38_RS17070 (OGM38_17045)	cytR	3462794..3463819 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OGM38_RS17075 (OGM38_17050)	priA	3463975..3466173 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OGM38_RS17080 (OGM38_17055)	rpmE	3466376..3466588 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
OGM38_RS17085 (OGM38_17060)	yiiX	3466649..3467257 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OGM38_RS17090 (OGM38_17065)	metJ	3467317..3467634 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=641864 OGM38_RS17070 WP_000644908.1 3462794..3463819(-) (cytR) [Escherichia coli strain R9]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=641864 OGM38_RS17070 WP_000644908.1 3462794..3463819(-) (cytR) [Escherichia coli strain R9]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625