Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   LZG54_RS01220 Genome accession   NZ_CP090382
Coordinates   258854..259561 (+) Length   235 a.a.
NCBI ID   WP_234114355.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 253854..264561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS01205 (LZG54_01205) ponA 254442..256994 (-) 2553 WP_234114354.1 penicillin-binding protein PBP1a -
  LZG54_RS01210 (LZG54_01210) pilM 257164..258222 (+) 1059 WP_179991402.1 pilus assembly protein PilM Machinery gene
  LZG54_RS01215 (LZG54_01215) pilN 258222..258857 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  LZG54_RS01220 (LZG54_01220) comO 258854..259561 (+) 708 WP_234114355.1 type 4a pilus biogenesis protein PilO Machinery gene
  LZG54_RS01225 (LZG54_01225) pilP 259561..260085 (+) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  LZG54_RS01230 (LZG54_01230) pilQ 260146..262287 (+) 2142 WP_234114976.1 type IV pilus secretin PilQ Machinery gene
  LZG54_RS01235 (LZG54_01235) aroK 262325..262855 (+) 531 WP_234114356.1 shikimate kinase AroK -
  LZG54_RS01240 (LZG54_01240) aroB 262886..263965 (+) 1080 WP_234114357.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26522.07 Da        Isoelectric Point: 4.5893

>NTDB_id=641864 LZG54_RS01220 WP_234114355.1 258854..259561(+) (comO) [Acinetobacter towneri strain SCLZS30]
MSLDEFDEVNQDAAVAPKKKMTVEKFFQQFNTLDPNNYGAWPLSVKITCWIFIIFLILALGYFVVIKPKLDAIAAAQAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLENEIKQEFFIEQP
ISIEATGDYHAFGSFVSGTAALPRIVTMHDFEIVATENKDKKTDIPQVTYKAQAKTYRYVGSADTQTAGNVGGAE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=641864 LZG54_RS01220 WP_234114355.1 258854..259561(+) (comO) [Acinetobacter towneri strain SCLZS30]
ATGAGTCTCGATGAATTTGATGAAGTAAATCAGGATGCTGCTGTTGCTCCGAAAAAGAAAATGACAGTTGAAAAGTTTTT
TCAACAGTTCAATACCCTAGATCCTAACAATTATGGTGCTTGGCCACTTTCGGTCAAAATTACCTGCTGGATTTTTATTA
TTTTCCTGATTCTAGCTTTAGGTTACTTTGTCGTAATCAAGCCAAAGTTAGATGCCATTGCAGCAGCACAAGCACAAGAA
CAAAACTTGTTAAATGAGTTCCGTGAAAAAGATTCTAAATTGCGTAATTTGCAGCAATACCAAGCGCAATTACAAGAAAT
GGAAGCGAACTTTAACCAACAACTTGAACAATTGCCAAAAGAAACTGAAATTCCAGGTTTAGTTGAAGATATTAACGTCA
CAGGCGTGAATTCAGGTTTGAAGTTTAAAAACATTCGTTTAGAGAATGAAATTAAACAAGAGTTCTTTATTGAACAGCCA
ATTTCAATTGAAGCGACAGGCGATTATCATGCCTTTGGTTCATTCGTAAGCGGTACAGCAGCATTGCCACGTATTGTGAC
CATGCACGACTTTGAAATTGTGGCGACTGAAAATAAAGACAAGAAAACCGATATTCCGCAAGTAACCTATAAAGCGCAAG
CAAAAACTTATCGTTATGTCGGCAGTGCAGATACACAAACTGCGGGTAATGTTGGAGGGGCTGAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

73.593

98.298

0.723
  pilO Acinetobacter baumannii D1279779

75.111

95.745

0.719