Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LZG54_RS01225 Genome accession   NZ_CP090382
Coordinates   259561..260085 (+) Length   174 a.a.
NCBI ID   WP_104852650.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254561..265085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS01210 (LZG54_01210) pilM 257164..258222 (+) 1059 WP_179991402.1 pilus assembly protein PilM Machinery gene
  LZG54_RS01215 (LZG54_01215) pilN 258222..258857 (+) 636 WP_004974461.1 PilN domain-containing protein Machinery gene
  LZG54_RS01220 (LZG54_01220) comO 258854..259561 (+) 708 WP_234114355.1 type 4a pilus biogenesis protein PilO Machinery gene
  LZG54_RS01225 (LZG54_01225) pilP 259561..260085 (+) 525 WP_104852650.1 pilus assembly protein PilP Machinery gene
  LZG54_RS01230 (LZG54_01230) pilQ 260146..262287 (+) 2142 WP_234114976.1 type IV pilus secretin PilQ Machinery gene
  LZG54_RS01235 (LZG54_01235) aroK 262325..262855 (+) 531 WP_234114356.1 shikimate kinase AroK -
  LZG54_RS01240 (LZG54_01240) aroB 262886..263965 (+) 1080 WP_234114357.1 3-dehydroquinate synthase -
  LZG54_RS01245 (LZG54_01245) - 263976..264821 (+) 846 WP_234114358.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19153.36 Da        Isoelectric Point: 7.1660

>NTDB_id=641865 LZG54_RS01225 WP_104852650.1 259561..260085(+) (pilP) [Acinetobacter towneri strain SCLZS30]
MKIEKLSLALLATVLMVGCDSRIDAVNAQMAEIRNQPPLPIEPAPVFEPAPTFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNLARQLQPLENYALESLTMKGSMRQNGQILALIQTPDGEIERIQRGSYMGVNHGRVVNITPTQIDLIEIIPDGREGY
VERPRSLVLIGPAP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=641865 LZG54_RS01225 WP_104852650.1 259561..260085(+) (pilP) [Acinetobacter towneri strain SCLZS30]
ATGAAAATTGAAAAGCTTTCGTTAGCCCTGTTGGCAACTGTATTAATGGTTGGTTGTGATTCACGGATTGATGCAGTCAA
TGCACAAATGGCTGAAATTCGTAATCAGCCACCACTACCCATTGAACCTGCACCTGTGTTTGAGCCTGCACCAACCTTTA
ACTATGCAGCACACCAGCTCAAAAGCCCATTTATGCCAAGTTCTTTGGCTGCTGAACTTAAAATTATGGCAGGGAAGCGT
GTTTATCCGAACCTTGCTCGCCAGTTACAACCCTTGGAAAATTATGCACTTGAATCACTGACCATGAAAGGTAGTATGCG
TCAAAATGGTCAAATTTTGGCATTGATTCAAACACCAGATGGTGAGATTGAGCGTATCCAGCGTGGTAGCTATATGGGGG
TAAATCATGGTCGTGTGGTGAATATTACACCTACACAAATTGATTTAATCGAAATTATTCCAGATGGTCGTGAAGGTTAT
GTAGAACGTCCAAGAAGTTTAGTTTTAATTGGGCCTGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.143

100

0.776
  comL Acinetobacter baylyi ADP1

71.839

100

0.718