Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LW136_RS17000 Genome accession   NZ_CP090366
Coordinates   3576575..3577792 (-) Length   405 a.a.
NCBI ID   WP_191121777.1    Uniprot ID   -
Organism   Stutzerimonas kunmingensis strain 7850S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3571575..3582792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW136_RS16965 (LW136_16965) rpsI 3571711..3572103 (-) 393 WP_003302797.1 30S ribosomal protein S9 -
  LW136_RS16970 (LW136_16970) rplM 3572118..3572546 (-) 429 WP_014821355.1 50S ribosomal protein L13 -
  LW136_RS16975 (LW136_16975) - 3572978..3574015 (+) 1038 WP_191122335.1 NADP(H)-dependent aldo-keto reductase -
  LW136_RS16980 (LW136_16980) - 3574078..3574758 (+) 681 WP_042928463.1 energy-coupling factor ABC transporter permease -
  LW136_RS16985 (LW136_16985) yacG 3574769..3574966 (-) 198 WP_003302802.1 DNA gyrase inhibitor YacG -
  LW136_RS16990 (LW136_16990) coaE 3574963..3575571 (-) 609 WP_191121779.1 dephospho-CoA kinase -
  LW136_RS16995 (LW136_16995) pilD 3575703..3576572 (-) 870 WP_191121778.1 prepilin peptidase Machinery gene
  LW136_RS17000 (LW136_17000) pilC 3576575..3577792 (-) 1218 WP_191121777.1 type II secretion system F family protein Machinery gene
  LW136_RS17005 (LW136_17005) pilB 3577794..3579497 (-) 1704 WP_234173235.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LW136_RS17015 (LW136_17015) pilE 3579830..3580297 (+) 468 WP_272877626.1 pilin Machinery gene
  LW136_RS17020 (LW136_17020) tfpZ 3580510..3581244 (+) 735 WP_234173241.1 TfpX/TfpZ family type IV pilin accessory protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44069.75 Da        Isoelectric Point: 9.7617

>NTDB_id=641733 LW136_RS17000 WP_191121777.1 3576575..3577792(-) (pilC) [Stutzerimonas kunmingensis strain 7850S]
MAQKAIKTSVFTWEGTNKQGAKIKGELSGVSPALVKAQLRKQGVNPQKVRKKSVSLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRQKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQDVFANFGAELPAFTLMVIGLSEALQAWWHMVLLVMFGAAYAFK
TAHSRSERFRNGFDRFLLKVPVVGDILYKSAVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATMKVKSDVSSGM
QLNFSMRTTDTFPSMAIQMTAIGEESGALDEMLAKVATFYEDEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=641733 LW136_RS17000 WP_191121777.1 3576575..3577792(-) (pilC) [Stutzerimonas kunmingensis strain 7850S]
ATGGCGCAGAAAGCGATTAAAACCAGTGTGTTCACCTGGGAAGGCACCAACAAGCAGGGCGCGAAGATAAAGGGCGAGCT
GAGCGGCGTCAGCCCCGCGCTGGTCAAGGCGCAGCTGCGTAAGCAGGGTGTCAATCCGCAGAAGGTGCGCAAGAAGTCGG
TTTCATTGTTCAGTGCTGGCAAGAAGATCAAGCCGATGGACATCGCCTTGTTCACTCGCCAGATGGCAACCATGATGAAG
GCGGGCGTGCCGCTTCTGCAGTCCTTCGATATTATCGGGGAAGGCTTTGACAACCCAAATATGCGAAAGCTGGTGGATGA
TCTGAAGCAGGAGGTCGCAGCGGGTAATAGTTTCGCAACCGCACTGCGCCAGAAGCCTCAGTACTTCGATGATCTCTATT
GCAACTTGGTAGATTCCGGTGAGCAATCCGGCTCGCTGGAAACTCTGCTGGACCGGGTGGCGACCTATAAGGAAAAGACC
GAAGCCTTGAAAGCCAAGATCAAGAAGGCGATGAATTATCCTATTGCCGTGGTGCTGGTTGCGATCATCGTTTCGGCGAT
CTTGCTGATCAAGGTGGTTCCGCAGTTTCAGGATGTTTTCGCAAACTTCGGAGCGGAGCTCCCGGCGTTTACATTGATGG
TGATTGGTTTATCCGAAGCGCTTCAGGCCTGGTGGCATATGGTGCTGCTCGTCATGTTCGGGGCGGCTTACGCCTTCAAA
ACAGCCCATAGCAGATCGGAGCGTTTTCGCAATGGATTTGACCGTTTTCTGCTCAAGGTTCCTGTGGTCGGCGACATTCT
TTATAAATCCGCCGTGGCGCGTTTCGCTCGCACCCTGTCAACTACGTTTGCTGCGGGTGTGCCATTGGTAGATGCGTTGG
ATTCGGTCGCTGGAGCAACGGGCAATGTGGTGTTCCGCAATGCGACGATGAAAGTGAAGAGCGATGTTTCGAGTGGTATG
CAGCTCAACTTCTCCATGCGTACGACCGACACCTTTCCCAGTATGGCGATCCAAATGACCGCCATCGGCGAGGAGTCCGG
CGCCCTTGATGAAATGCTGGCGAAGGTGGCGACATTCTATGAAGACGAAGTCGACAACATGGTTGACGGGCTGACTGCCC
TGATGGAACCAATGATCATGGCGGTGCTGGGCGTGCTGGTCGGCGGTTTGATCATTGCCATGTATCTCCCGATTTTCCAG
TTGGGTGCCGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

92.099

100

0.921
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Acinetobacter baumannii D1279779

58.765

100

0.588
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilG Neisseria gonorrhoeae MS11

44.527

99.259

0.442
  pilG Neisseria meningitidis 44/76-A

44.527

99.259

0.442
  pilC Vibrio cholerae strain A1552

42.424

97.778

0.415
  pilC Vibrio campbellii strain DS40M4

41.414

97.778

0.405