Detailed information NTG0641732

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LW136_RS16995
• Genome accession: NZ_CP090366
• Coordinates: 3575703..3576572 (-)
• Length: 289 a.a.
• NCBI ID: WP_191121778.1
• Uniprot ID: -
• Organism: Stutzerimonas kunmingensis strain 7850S
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3570703..3581572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LW136_RS16960 (LW136_16960)	petA	3570861..3571454 (-)	594	WP_014821354.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
LW136_RS16965 (LW136_16965)	rpsI	3571711..3572103 (-)	393	WP_003302797.1	30S ribosomal protein S9	-
LW136_RS16970 (LW136_16970)	rplM	3572118..3572546 (-)	429	WP_014821355.1	50S ribosomal protein L13	-
LW136_RS16975 (LW136_16975)	-	3572978..3574015 (+)	1038	WP_191122335.1	NADP(H)-dependent aldo-keto reductase	-
LW136_RS16980 (LW136_16980)	-	3574078..3574758 (+)	681	WP_042928463.1	energy-coupling factor ABC transporter permease	-
LW136_RS16985 (LW136_16985)	yacG	3574769..3574966 (-)	198	WP_003302802.1	DNA gyrase inhibitor YacG	-
LW136_RS16990 (LW136_16990)	coaE	3574963..3575571 (-)	609	WP_191121779.1	dephospho-CoA kinase	-
LW136_RS16995 (LW136_16995)	pilD	3575703..3576572 (-)	870	WP_191121778.1	prepilin peptidase	Machinery gene
LW136_RS17000 (LW136_17000)	pilC	3576575..3577792 (-)	1218	WP_191121777.1	type II secretion system F family protein	Machinery gene
LW136_RS17005 (LW136_17005)	pilB	3577794..3579497 (-)	1704	WP_234173235.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LW136_RS17015 (LW136_17015)	pilE	3579830..3580297 (+)	468	WP_272877626.1	pilin	Machinery gene
LW136_RS17020 (LW136_17020)	tfpZ	3580510..3581244 (+)	735	WP_234173241.1	TfpX/TfpZ family type IV pilin accessory protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32227.21 Da
• Isoelectric Point: 6.6226

>NTDB_id=641732 LW136_RS16995 WP_191121778.1 3575703..3576572(-) (pilD) [Stutzerimonas kunmingensis strain 7850S]
MILIDYLASHVLAFVLSAALLGLLVGSFLNVVIYRLPIMMQREWRAQALEYLECPPEPVGERFNLLLPNSRCPHCDHQIR
SWENIPLVSWLALRGKCSSCRAPISSRYPLVELVCGLLSGYVAWHFGFTWEAGAMLLLTWGLVAMSMIDIDHQLLPDSLV
LPLLWLGLILNNFGLFVSLESALWGAVAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGTILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 870 bp

>NTDB_id=641732 LW136_RS16995 WP_191121778.1 3575703..3576572(-) (pilD) [Stutzerimonas kunmingensis strain 7850S]
ATGATCCTGATCGATTATCTGGCCAGCCACGTGCTGGCCTTTGTTTTATCTGCTGCTCTGCTCGGCTTGCTGGTCGGCAG
CTTTCTCAACGTCGTGATCTATCGCTTGCCGATCATGATGCAACGTGAATGGCGTGCGCAGGCGCTTGAGTATCTCGAGT
GCCCACCGGAGCCGGTTGGTGAGCGCTTCAATCTGCTGCTACCAAACTCACGGTGTCCGCACTGTGACCACCAGATTCGC
TCATGGGAAAATATCCCCTTGGTCAGCTGGCTGGCCCTGCGTGGCAAGTGCTCGTCCTGCCGGGCGCCGATCAGCAGTCG
CTATCCCCTTGTGGAGTTGGTGTGCGGGCTGCTTTCTGGCTATGTCGCTTGGCATTTCGGTTTCACCTGGGAGGCAGGAG
CAATGCTGTTGCTGACCTGGGGATTGGTGGCGATGAGCATGATCGATATCGATCATCAGTTGCTGCCCGATTCGCTGGTT
CTGCCGCTGTTGTGGCTTGGCCTCATCCTGAACAACTTCGGTTTGTTCGTATCGCTTGAAAGTGCACTGTGGGGAGCGGT
AGCGGGATATCTGAGCCTGTGGTCGGTTTATTGGCTGTTCAAGCTGGTCACCGGCAAAGAAGGTATGGGCTATGGCGATT
TCAAACTGCTTGCGATGTTAGGAGCTTGGGGTGGTTGGCAGGTGTTACCACTTACCATTCTCTTGTCGTCGGTGGTTGGG
GCTGTTCTTGGCACAATCCTGTTGCGGGTGCAGCGCGCCGAGAGCAGCACGCCCATCCCTTTCGGTCCCTACTTGGCAAT
CGCCGGCTGGATCGCGTTGCTTTGGGGTGACCGGATTACCGAGAGCTATCTCCAGTTCGCGCGCTTCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.42	95.502	0.567
pilD	Vibrio campbellii strain DS40M4	56.41	94.464	0.533
pilD	Acinetobacter baumannii D1279779	51.761	98.27	0.509
pilD	Acinetobacter nosocomialis M2	51.761	98.27	0.509
pilD	Neisseria gonorrhoeae MS11	52.852	91.003	0.481