Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LXM48_RS13485 Genome accession   NZ_CP090180
Coordinates   2753563..2754789 (+) Length   408 a.a.
NCBI ID   WP_234304144.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2748563..2759789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS13440 (LXM48_13440) rimP 2748929..2749453 (-) 525 WP_004692708.1 ribosome maturation factor RimP -
  LXM48_RS13470 (LXM48_13470) secG 2750405..2750734 (-) 330 WP_078388529.1 preprotein translocase subunit SecG -
  LXM48_RS13475 (LXM48_13475) tpiA 2750748..2751539 (-) 792 WP_078425745.1 triose-phosphate isomerase -
  LXM48_RS13480 (LXM48_13480) pilB 2751820..2753532 (+) 1713 WP_234304143.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LXM48_RS13485 (LXM48_13485) pilC 2753563..2754789 (+) 1227 WP_234304144.1 type II secretion system F family protein Machinery gene
  LXM48_RS13490 (LXM48_13490) pilD 2754789..2755649 (+) 861 WP_058868793.1 A24 family peptidase Machinery gene
  LXM48_RS13495 (LXM48_13495) coaE 2755658..2756257 (+) 600 WP_234304145.1 dephospho-CoA kinase -
  LXM48_RS13500 (LXM48_13500) - 2756272..2757189 (-) 918 Protein_2615 DMT family transporter -
  LXM48_RS13505 (LXM48_13505) rlmB 2757222..2757971 (-) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LXM48_RS13510 (LXM48_13510) - 2758114..2758437 (-) 324 WP_078388524.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44830.25 Da        Isoelectric Point: 9.8063

>NTDB_id=641030 LXM48_RS13485 WP_234304144.1 2753563..2754789(+) (pilC) [Acinetobacter johnsonii strain DJ-Red]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGIMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPAAVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSDWMQKYWFILIIVIGVVIT
ALLETKKRSKRFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=641030 LXM48_RS13485 WP_234304144.1 2753563..2754789(+) (pilC) [Acinetobacter johnsonii strain DJ-Red]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAATCTCGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGGATAATGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACTCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCGCTGGTTCAAGGTTTTGAAATTGTGGCTGAAGGCCTAGAAAACCCATCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAAGGTGGTAATACCTTTGCGGGAGCACTCAAAAAATATCCGCAATATTTTGACA
ACTTATTCTGTTCATTGGTTGAATCCGGCGAACAATCAGGTGCTCTGGAGACCATGCTGGATCGTGTGGCGGTCTATAAA
GAAAAAAGTGAATTGTTAAAGCAAAAAATTAAAAAGGCCATGAAATATCCAGCCGCTGTCGTTGTGGTTGCAGTGATCGT
GACCATTATTTTGATGGTCAAAGTTGTCCCTGTTTTCCAAGAACTCTTTAGCTCCTTTGGTGCAGACTTACCTGCATTCA
CTCAAATGGTGGTGAATATGTCTGATTGGATGCAGAAATACTGGTTCATTTTGATTATTGTGATCGGTGTTGTGATTACC
GCTCTACTTGAAACCAAAAAGCGGAGTAAAAGGTTTCGTGACATGCTGGATAAAGCCGCGCTAAAAGCCCCAATTTTCGG
TGATTTAGTCTATAAAGCGATTATCGCGCGCTATAGCCGTACCCTATCGACAACTTTTGCTGCGGGTGTACCCTTAATTG
ATGCCCTCGAGTCTACCGCGGGTGCAACCAACAATGTAGTCTATGAAGAAGCTGTGATGAAGATCCGTGAAGATGTCGCA
ACCGGGCAACAACTTCAATTCGCAATGCGTGCTACCAATAAATTTCCATCAATGGCCGTGCAAATGGTAGCCATTGGTGA
AGAGTCTGGTGCGCTCGATGCCATGCTGGATAAAGTTGCAACCCACTATGAAAATGAAGTCGATAATGCGGTGGATGGCT
TAACGGCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.48

100

0.885
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

61.235

99.265

0.608
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

41.667

100

0.417
  pilC Thermus thermophilus HB27

37.157

98.284

0.365