NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	LXM48_RS13490	Genome accession	NZ_CP090180
Coordinates	2754789..2755649 (+)	Length	286 a.a.
NCBI ID	WP_058868793.1	Uniprot ID	-
Organism	Acinetobacter johnsonii strain DJ-Red
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2749789..2760649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXM48_RS13470 (LXM48_13470)	secG	2750405..2750734 (-)	330	WP_078388529.1	preprotein translocase subunit SecG	-
LXM48_RS13475 (LXM48_13475)	tpiA	2750748..2751539 (-)	792	WP_078425745.1	triose-phosphate isomerase	-
LXM48_RS13480 (LXM48_13480)	pilB	2751820..2753532 (+)	1713	WP_234304143.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LXM48_RS13485 (LXM48_13485)	pilC	2753563..2754789 (+)	1227	WP_234304144.1	type II secretion system F family protein	Machinery gene
LXM48_RS13490 (LXM48_13490)	pilD	2754789..2755649 (+)	861	WP_058868793.1	A24 family peptidase	Machinery gene
LXM48_RS13495 (LXM48_13495)	coaE	2755658..2756257 (+)	600	WP_234304145.1	dephospho-CoA kinase	-
LXM48_RS13500 (LXM48_13500)	-	2756272..2757189 (-)	918	Protein_2615	DMT family transporter	-
LXM48_RS13505 (LXM48_13505)	rlmB	2757222..2757971 (-)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LXM48_RS13510 (LXM48_13510)	-	2758114..2758437 (-)	324	WP_078388524.1	pyrimidine/purine nucleoside phosphorylase	-
LXM48_RS13515 (LXM48_13515)	recN	2758829..2760490 (+)	1662	WP_201702299.1	DNA repair protein RecN	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32001.45 Da Isoelectric Point: 8.0564

                                >NTDB_id=641031 LXM48_RS13490 WP_058868793.1 2754789..2755649(+) (pilD) [Acinetobacter johnsonii strain DJ-Red]

MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPQCKSA

IRWYQNVPVMSWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR

YTLTLAALGLGVNSYAIYTTPTMAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

Download Length: 861 bp

                                >NTDB_id=641031 LXM48_RS13490 WP_058868793.1 2754789..2755649(+) (pilD) [Acinetobacter johnsonii strain DJ-Red]

ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG

TAGTTTTCTAAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC

ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCCAATGTAAAAGTGCC

ATACGCTGGTATCAAAATGTCCCTGTGATGAGTTGGTTACTGCTACGAGGAAAGTGTGGCACTTGCCATAACCCGATCAG

TATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGCCCAACAATCCAAA

TGTTGTTTGGTCTCGTACTCACTTACATTTTAATCGCCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC

TATACCCTCACCCTTGCAGCTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCAACGATGGCTATTTGGGG

TTACATCATTGGCTTTTTATGCTTATGGATTGTCTACTATCTGTTTAAGCTCATCACAGGTAAGGAAGGTATGGGTTATG

GCGACTTTAAGTTACTTGCTGCTTTAGGCGCATGGATGGGCCCTTTGCTGCTGCCGCTGATTGTGCTACTTTCCTCTTTC

GTAGGTGCCATTATCGGCATCATTCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCATATATTGCCAT

CGCAGGTTGGATTGCCTTTCTGTGGGGTGAGCAAATTATGAAAATATATTTAGGCAATTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	79.371	100	0.794
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	53.558	93.357	0.5
pilD	Vibrio campbellii strain DS40M4	52.06	93.357	0.486
pilD	Neisseria gonorrhoeae MS11	45.421	95.455	0.434

Detailed information NTG0641031