Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LVE68_RS15365 Genome accession   NZ_CP089928
Coordinates   3549930..3551141 (-) Length   403 a.a.
NCBI ID   WP_232941318.1    Uniprot ID   -
Organism   Microbulbifer sp. YPW16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3544930..3556141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVE68_RS15340 (LVE68_15340) argJ 3545875..3547077 (+) 1203 WP_232941313.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  LVE68_RS15345 (LVE68_15345) mutT 3547450..3547860 (+) 411 WP_232941314.1 8-oxo-dGTP diphosphatase MutT -
  LVE68_RS15350 (LVE68_15350) yacG 3548080..3548301 (-) 222 WP_232941315.1 DNA gyrase inhibitor YacG -
  LVE68_RS15355 (LVE68_15355) coaE 3548308..3548913 (-) 606 WP_232941316.1 dephospho-CoA kinase -
  LVE68_RS15360 (LVE68_15360) - 3549033..3549917 (-) 885 WP_232941317.1 A24 family peptidase -
  LVE68_RS15365 (LVE68_15365) pilC 3549930..3551141 (-) 1212 WP_232941318.1 type II secretion system F family protein Machinery gene
  LVE68_RS15370 (LVE68_15370) pilB 3551275..3552987 (-) 1713 WP_232941319.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LVE68_RS15380 (LVE68_15380) pilE 3553525..3553968 (+) 444 WP_305080387.1 pilin Machinery gene
  LVE68_RS15385 (LVE68_15385) - 3554041..3555960 (+) 1920 WP_232941320.1 hypothetical protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43441.12 Da        Isoelectric Point: 9.5856

>NTDB_id=639190 LVE68_RS15365 WP_232941318.1 3549930..3551141(-) (pilC) [Microbulbifer sp. YPW16]
MANATAVAYVYKGVDNKGNKVEGEINGTTPALIKAQLRKQGIIANKVQKKPKPLFGGTKKVKPADIALFTRQLATMMKAG
VPLVQSFDIVADGLENDGVRDLVFKIRDDVSSGTAFAEALRKHPLYFDDLFCNLVASGEQSGALETMLDRIATYKEKTEQ
LKAKIKKAMTYPIAVIVVAIVVTSILLIKVVPQFAQTFSSFGADLPAFTQMVVAMSEWMQANWFIALILAVISIGGTLEV
KKRNKKVSRFFDRLMLKLPIIGAITYNSIAARFGRTLSTTFAAGVPLIDALKSVAGATGNSVYEEATLKIRDSVATGIPL
NAALRSSGLYPSMLVQMAAIGEESGALDDMLAKAADFYEEAVDNMVDNLTTLLEPMIMAVLGILVGGLMVAMYLPIFQLG
QVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=639190 LVE68_RS15365 WP_232941318.1 3549930..3551141(-) (pilC) [Microbulbifer sp. YPW16]
ATGGCCAATGCCACAGCAGTCGCATATGTCTACAAGGGTGTGGACAATAAAGGCAACAAGGTCGAGGGAGAAATCAACGG
CACTACCCCCGCCCTGATCAAGGCACAGTTGCGCAAGCAGGGGATCATAGCCAACAAGGTCCAGAAGAAGCCGAAACCAC
TCTTTGGTGGAACAAAGAAGGTCAAACCCGCGGATATTGCGCTCTTTACTCGGCAGCTGGCCACAATGATGAAGGCTGGC
GTACCCCTGGTGCAGAGCTTCGACATTGTGGCCGATGGCCTCGAGAACGATGGGGTGAGGGACCTCGTTTTCAAGATCCG
GGATGATGTTTCATCGGGTACCGCATTTGCTGAAGCATTACGGAAACATCCGCTGTACTTCGATGATCTGTTCTGTAATC
TTGTGGCCTCGGGTGAGCAGTCGGGTGCGCTGGAGACCATGCTGGACCGCATCGCCACCTACAAGGAAAAAACGGAACAG
CTTAAAGCCAAAATAAAGAAGGCTATGACCTACCCGATCGCCGTTATTGTCGTTGCGATTGTGGTGACCTCTATCCTCCT
AATCAAGGTGGTTCCCCAGTTTGCCCAGACCTTCTCCAGCTTCGGTGCAGACTTGCCTGCATTTACGCAAATGGTTGTTG
CCATGTCTGAATGGATGCAGGCCAACTGGTTCATTGCCCTTATCCTGGCAGTGATCTCAATAGGGGGAACTCTTGAGGTA
AAAAAACGTAACAAGAAAGTTTCCCGTTTCTTTGACCGACTGATGCTAAAACTGCCAATTATTGGAGCCATCACCTACAA
CTCTATTGCGGCACGCTTTGGCCGTACGCTCTCGACCACATTTGCAGCGGGTGTCCCCCTGATTGATGCGCTCAAGTCCG
TTGCCGGGGCAACGGGTAACAGTGTCTATGAGGAAGCAACACTCAAGATCCGGGATTCAGTCGCCACCGGCATTCCGCTC
AATGCCGCGCTGCGCAGTTCGGGACTGTATCCCTCCATGCTGGTGCAAATGGCCGCAATTGGCGAAGAATCCGGTGCCCT
GGACGATATGCTGGCTAAGGCTGCCGATTTCTATGAGGAGGCCGTAGACAATATGGTGGACAACCTGACCACCCTGCTCG
AGCCGATGATTATGGCCGTCCTGGGTATCCTGGTGGGCGGCCTGATGGTTGCCATGTATCTGCCTATCTTCCAGCTGGGC
CAGGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.038

98.015

0.618
  pilC Acinetobacter baylyi ADP1

62.217

98.511

0.613
  pilC Acinetobacter baumannii D1279779

61.965

98.511

0.61
  pilC Legionella pneumophila strain ERS1305867

56.965

99.752

0.568
  pilG Neisseria gonorrhoeae MS11

44.192

98.263

0.434
  pilG Neisseria meningitidis 44/76-A

43.939

98.263

0.432
  pilC Vibrio cholerae strain A1552

42.172

98.263

0.414
  pilC Vibrio campbellii strain DS40M4

40.955

98.759

0.404
  pilC Thermus thermophilus HB27

36.93

100

0.382