Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LUZ03_RS14450 Genome accession   NZ_CP089487
Coordinates   2883013..2883438 (+) Length   141 a.a.
NCBI ID   WP_000934384.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 0220_II_ST5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2860560..2893030 2883013..2883438 within 0


Gene organization within MGE regions


Location: 2860560..2893030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUZ03_RS14295 groES 2860560..2860844 (+) 285 WP_000917289.1 co-chaperone GroES -
  LUZ03_RS14300 groL 2860920..2862536 (+) 1617 WP_000240645.1 chaperonin GroEL -
  LUZ03_RS14305 - 2862631..2863177 (-) 547 Protein_2778 site-specific integrase -
  LUZ03_RS14310 - 2863238..2863450 (+) 213 WP_000128898.1 LuxR C-terminal-related transcriptional regulator -
  LUZ03_RS14315 - 2863447..2864037 (+) 591 WP_001293058.1 terminase small subunit -
  LUZ03_RS14320 - 2864355..2864791 (+) 437 Protein_2781 hypothetical protein -
  LUZ03_RS14325 - 2864897..2865340 (+) 444 WP_000022887.1 GNAT family N-acetyltransferase -
  LUZ03_RS14330 - 2866193..2867500 (-) 1308 WP_001045079.1 TrkH family potassium uptake protein -
  LUZ03_RS14335 - 2867661..2868572 (+) 912 WP_000825510.1 iron-hydroxamate ABC transporter substrate-binding protein -
  LUZ03_RS14340 - 2868634..2869479 (+) 846 WP_000812008.1 class I SAM-dependent methyltransferase -
  LUZ03_RS14345 - 2869851..2871074 (-) 1224 WP_000206638.1 ArgE/DapE family deacylase -
  LUZ03_RS14350 lukH 2871509..2872564 (+) 1056 WP_000791407.1 bi-component leukocidin LukGH subunit H -
  LUZ03_RS14355 lukG 2872586..2873602 (+) 1017 WP_000595324.1 bi-component leukocidin LukGH subunit G -
  LUZ03_RS14360 sph 2873840..2874664 (-) 825 Protein_2789 sphingomyelin phosphodiesterase -
  LUZ03_RS14365 - 2874721..2875758 (-) 1038 WP_061730417.1 site-specific integrase -
  LUZ03_RS14370 - 2875817..2876281 (-) 465 WP_000825947.1 hypothetical protein -
  LUZ03_RS14375 - 2876381..2876563 (-) 183 WP_000705248.1 hypothetical protein -
  LUZ03_RS14380 - 2876608..2877465 (-) 858 WP_000804507.1 HIRAN domain-containing protein -
  LUZ03_RS14385 - 2877477..2878193 (-) 717 WP_001083967.1 LexA family transcriptional regulator -
  LUZ03_RS14390 - 2878357..2878599 (+) 243 WP_000639927.1 DUF739 family protein -
  LUZ03_RS14395 - 2878613..2878873 (+) 261 WP_000435341.1 transcriptional regulator -
  LUZ03_RS14400 - 2878897..2879436 (-) 540 WP_000351243.1 hypothetical protein -
  LUZ03_RS14405 - 2879493..2880248 (+) 756 WP_046377105.1 phage antirepressor KilAC domain-containing protein -
  LUZ03_RS14410 - 2880265..2880459 (+) 195 WP_407301334.1 hypothetical protein -
  LUZ03_RS14415 - 2880490..2880630 (+) 141 WP_000939496.1 hypothetical protein -
  LUZ03_RS14420 - 2880645..2881277 (-) 633 WP_000275058.1 hypothetical protein -
  LUZ03_RS14425 - 2881336..2881656 (+) 321 WP_001120197.1 DUF771 domain-containing protein -
  LUZ03_RS14430 - 2881653..2881814 (+) 162 WP_000066017.1 DUF1270 domain-containing protein -
  LUZ03_RS14435 - 2881906..2882166 (+) 261 WP_000291089.1 DUF1108 family protein -
  LUZ03_RS14440 - 2882176..2882397 (+) 222 WP_000815402.1 DUF2483 family protein -
  LUZ03_RS14445 - 2882390..2883013 (+) 624 WP_000139720.1 DUF1071 domain-containing protein -
  LUZ03_RS14450 ssbA 2883013..2883438 (+) 426 WP_000934384.1 single-stranded DNA-binding protein Machinery gene
  LUZ03_RS14455 - 2883449..2884000 (+) 552 WP_001004506.1 NUMOD4 domain-containing protein -
  LUZ03_RS14460 - 2884001..2884696 (+) 696 WP_061730419.1 putative HNHc nuclease -
  LUZ03_RS14465 - 2884668..2885462 (+) 795 WP_061730420.1 phage replisome organizer N-terminal domain-containing protein -
  LUZ03_RS14470 - 2885462..2885818 (+) 357 WP_061730421.1 hypothetical protein -
  LUZ03_RS14475 - 2885815..2887056 (+) 1242 WP_001106169.1 DnaB helicase C-terminal domain-containing protein -
  LUZ03_RS14480 - 2887053..2887268 (+) 216 WP_001024406.1 hypothetical protein -
  LUZ03_RS14485 - 2887271..2887492 (+) 222 WP_001123684.1 DUF3269 family protein -
  LUZ03_RS14490 - 2887502..2887909 (+) 408 WP_000401950.1 RusA family crossover junction endodeoxyribonuclease -
  LUZ03_RS14495 - 2887909..2888094 (+) 186 WP_053037310.1 DUF3113 family protein -
  LUZ03_RS14500 - 2888095..2888467 (+) 373 Protein_2817 SA1788 family PVL leukocidin-associated protein -
  LUZ03_RS14505 - 2888467..2888721 (+) 255 WP_000022738.1 DUF3310 domain-containing protein -
  LUZ03_RS14510 - 2888721..2888969 (+) 249 WP_078171560.1 SAV1978 family virulence-associated passenger protein -
  LUZ03_RS14515 - 2888983..2889387 (+) 405 WP_031893771.1 hypothetical protein -
  LUZ03_RS14520 - 2889384..2889578 (+) 195 WP_000983953.1 hypothetical protein -
  LUZ03_RS14525 - 2889575..2890024 (+) 450 WP_000982705.1 YopX family protein -
  LUZ03_RS14530 - 2890021..2890530 (+) 510 WP_001105598.1 hypothetical protein -
  LUZ03_RS14535 - 2890527..2890937 (+) 411 WP_000197967.1 hypothetical protein -
  LUZ03_RS14540 - 2890930..2891466 (+) 537 WP_001066444.1 dUTPase -
  LUZ03_RS14545 - 2891503..2891709 (+) 207 WP_000195820.1 DUF1381 domain-containing protein -
  LUZ03_RS14550 rinB 2891706..2891855 (+) 150 WP_000595265.1 transcriptional activator RinB -
  LUZ03_RS14555 - 2891855..2892055 (+) 201 WP_000265041.1 DUF1514 family protein -
  LUZ03_RS14560 - 2892083..2892499 (+) 417 WP_000590126.1 hypothetical protein -
  LUZ03_RS14565 - 2892731..2893030 (+) 300 WP_000988336.1 HNH endonuclease -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15784.48 Da        Isoelectric Point: 8.4826

>NTDB_id=637370 LUZ03_RS14450 WP_000934384.1 2883013..2883438(+) (ssbA) [Staphylococcus aureus strain 0220_II_ST5]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=637370 LUZ03_RS14450 WP_000934384.1 2883013..2883438(+) (ssbA) [Staphylococcus aureus strain 0220_II_ST5]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGTGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.729

83.688

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.844

100

0.418
  ssbA Streptococcus mutans UA159

46.087

81.56

0.376
  ssbB/cilA Streptococcus mitis NCTC 12261

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae Rx1

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae D39

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae R6

44.068

83.688

0.369
  ssbB/cilA Streptococcus mitis SK321

44.068

83.688

0.369