Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LUY99_RS15475 Genome accession   NZ_CP089479
Coordinates   3059117..3059545 (+) Length   142 a.a.
NCBI ID   WP_000934385.1    Uniprot ID   A0A2K0CLZ8
Organism   Staphylococcus aureus strain 0073_III_ST239     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3054117..3064545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY99_RS15415 - 3054434..3055150 (-) 717 WP_001083975.1 LexA family transcriptional regulator -
  LUY99_RS15420 - 3055314..3055556 (+) 243 WP_000639923.1 DUF739 family protein -
  LUY99_RS15425 - 3055569..3056015 (+) 447 WP_000435349.1 hypothetical protein -
  LUY99_RS15430 - 3056030..3056170 (+) 141 WP_000939495.1 hypothetical protein -
  LUY99_RS15435 - 3056163..3056372 (-) 210 WP_000772137.1 hypothetical protein -
  LUY99_RS15440 - 3056429..3057169 (+) 741 WP_001148589.1 phage antirepressor KilAC domain-containing protein -
  LUY99_RS15445 - 3057345..3057575 (-) 231 WP_000395455.1 hypothetical protein -
  LUY99_RS15450 - 3057634..3057762 (+) 129 WP_001559112.1 hypothetical protein -
  LUY99_RS15455 - 3057755..3057916 (+) 162 WP_000066026.1 DUF1270 family protein -
  LUY99_RS15460 - 3058010..3058270 (+) 261 WP_000291068.1 DUF1108 family protein -
  LUY99_RS15465 - 3058280..3058501 (+) 222 WP_000815401.1 DUF2483 family protein -
  LUY99_RS15470 - 3058494..3059117 (+) 624 WP_000139720.1 DUF1071 domain-containing protein -
  LUY99_RS15475 ssbA 3059117..3059545 (+) 429 WP_000934385.1 single-stranded DNA-binding protein Machinery gene
  LUY99_RS15480 - 3059559..3060233 (+) 675 WP_001121810.1 putative HNHc nuclease -
  LUY99_RS15485 - 3060226..3060981 (+) 756 WP_001037657.1 DnaD domain protein -
  LUY99_RS15490 - 3060981..3061337 (+) 357 WP_001132243.1 hypothetical protein -
  LUY99_RS15495 - 3061334..3062575 (+) 1242 WP_001106166.1 DnaB helicase C-terminal domain-containing protein -
  LUY99_RS15500 - 3062572..3062787 (+) 216 WP_001024398.1 hypothetical protein -
  LUY99_RS15505 - 3062790..3063011 (+) 222 WP_001123688.1 DUF3269 family protein -
  LUY99_RS15510 - 3063021..3063446 (+) 426 WP_000451861.1 phage N-6-adenine-methyltransferase -
  LUY99_RS15515 - 3063443..3063847 (+) 405 WP_017431722.1 DUF1064 domain-containing protein -
  LUY99_RS15520 - 3063852..3064037 (+) 186 WP_016023518.1 DUF3113 family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15872.58 Da        Isoelectric Point: 8.4825

>NTDB_id=637193 LUY99_RS15475 WP_000934385.1 3059117..3059545(+) (ssbA) [Staphylococcus aureus strain 0073_III_ST239]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=637193 LUY99_RS15475 WP_000934385.1 3059117..3059545(+) (ssbA) [Staphylococcus aureus strain 0073_III_ST239]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K0CLZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.958

100

0.423
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

39.437

100

0.394
  ssbB/cilA Streptococcus mitis SK321

39.437

100

0.394