Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LTQ02_RS12360 Genome accession   NZ_CP089205
Coordinates   2720399..2722117 (-) Length   572 a.a.
NCBI ID   WP_243585238.1    Uniprot ID   -
Organism   Vibrio splendidus strain 4_C08b     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2715399..2727117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ02_RS12340 (LTQ02_12340) - 2716075..2716923 (-) 849 WP_004729661.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  LTQ02_RS12345 (LTQ02_12345) - 2716993..2718510 (-) 1518 WP_243578742.1 AAA family ATPase -
  LTQ02_RS12350 (LTQ02_12350) aroB 2718590..2719678 (-) 1089 WP_004729663.1 3-dehydroquinate synthase -
  LTQ02_RS12355 (LTQ02_12355) aroK 2719704..2720222 (-) 519 WP_004729664.1 shikimate kinase AroK -
  LTQ02_RS12360 (LTQ02_12360) pilQ 2720399..2722117 (-) 1719 WP_243585238.1 type IV pilus secretin PilQ family protein Machinery gene
  LTQ02_RS12365 (LTQ02_12365) pilP 2722153..2722671 (-) 519 WP_004729666.1 pilus assembly protein PilP Machinery gene
  LTQ02_RS12370 (LTQ02_12370) pilO 2722658..2723287 (-) 630 WP_004729667.1 type 4a pilus biogenesis protein PilO Machinery gene
  LTQ02_RS12375 (LTQ02_12375) pilN 2723280..2723879 (-) 600 WP_102488973.1 PilN domain-containing protein Machinery gene
  LTQ02_RS12380 (LTQ02_12380) pilM 2723863..2724888 (-) 1026 WP_243578739.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 61926.70 Da        Isoelectric Point: 4.4695

>NTDB_id=635757 LTQ02_RS12360 WP_243585238.1 2720399..2722117(-) (pilQ) [Vibrio splendidus strain 4_C08b]
MIKGISGLVSKALQGFAVSVMLVVSVLSHAESLPNQLENIDFRVNKDKDAVIIIELATSTAVVDVQRAQEGLSIELLNTQ
VNDDKLYLLDVKDFATLVEGIEVYKETSSTRLLATIAGDYQYEYNLKGRFIEVVISKPVINEATKEKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEK
SRLEEELGELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELAENIAVIRGIIESLDIPVKQVQ
IEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFLNVNLGATSPNASSIAFQVAKL
GSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLD
LSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSE
LLIFVTPKVVIQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=635757 LTQ02_RS12360 WP_243585238.1 2720399..2722117(-) (pilQ) [Vibrio splendidus strain 4_C08b]
ATGATTAAAGGAATAAGTGGATTAGTGAGCAAGGCTCTACAAGGTTTTGCTGTGTCTGTGATGTTGGTTGTTAGCGTGCT
CAGTCACGCCGAGAGCTTACCTAATCAATTGGAGAATATTGATTTTAGGGTAAACAAAGATAAAGACGCCGTCATTATTA
TTGAGCTGGCAACCAGCACCGCTGTGGTGGATGTTCAACGTGCTCAGGAAGGGTTAAGTATCGAATTACTCAATACTCAA
GTTAATGACGATAAGCTTTATCTTTTGGATGTGAAGGATTTCGCGACCCTAGTGGAAGGTATTGAAGTCTATAAAGAGAC
GTCCAGCACACGACTGTTGGCGACGATCGCTGGCGACTATCAGTATGAATATAACCTAAAAGGTCGCTTCATAGAGGTGG
TGATCAGCAAGCCTGTTATCAATGAAGCGACCAAAGAGAAAAGCGTTTTAGAAAAAGAGGGCAAACTGATATCGATTAAC
TTCCAAGATATCCCGGTACGAAATGTCCTGCAGCTGATTGCTGACTACAACGATTTCAATCTCGTGGTGTCTGACTCAGT
AGCGGGTAACCTCACTTTACGTTTAGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGACTAG
ATAAGCGCGTTGATGGCAATGTTATTTTGGTGGCGCCAAAAGCAGAACTCGATCTTCGAGAGCAACAAGCGTTAGAGAAA
TCTCGCTTGGAAGAGGAGTTAGGGGAGCTTAAGTCGGAAATCATCAAGATTAATTTTGCTAAAGCCACCGACATTGCCGA
CATGATTGGCGGTGAAGGTGCGGTGAGCATGTTGTCCGATCGTGGCTCGATCACCATTGATGAACGCACCAATTCCCTAT
TGATTCGTGAACTGGCAGAAAACATTGCCGTGATACGAGGCATCATTGAATCTTTGGACATCCCCGTGAAGCAAGTCCAG
ATAGAGGCGCGCATCGTAACCGTTACCGAGGGTAACCTTGATGAGTTAGGGGTGCGTTGGGGTGTTTCTTCCACCAACGG
TAGCTTCAAAGTTGGCGGCTCGATAGAGGGTAACCATCCATCGCAAATTACGCCGTATGACGATAATGGTGGGAACAGTG
CGATTGACGATTTCCTCAACGTTAATCTAGGGGCGACATCTCCTAATGCATCAAGCATTGCGTTTCAGGTGGCCAAACTG
GGTTCAGATACCTTGCTTGATCTTGAATTGTCGGCATTACAACAAGAGTCAAAAGCTGAGATTATTTCCAGCCCACGTTT
AATCACCACCAATAAAAAGCCCGCTTATATTGAGCAAGGTACTGAAATTCCTTATTTAGAGTCGTCTTCAAGTGGTGCTA
CTTCGGTCGCATTTAAGAAAGCGGTGTTGAGTCTTAAGGTGACACCACAAATCACGCCCGACAATCGTTTGGTATTGGAT
TTAAGCGTGACTCAAGATAGGCCAGGGCAAGTAGTGAAAACGGGAACGGGTGAGGCTGTTGCCATTGATACTCAACGCAT
AGGGACGCAAGTGCTTGTTAATAATGGTGAAACAGTAGTACTTGGCGGGATATTTCAGCACAGTGTGAGCAGTACAGTGG
ACAAAGTTCCTCTATTAGGAGACCTGCCAGTTTTGGGTGCATTATTCCGTCGTAGCTATGAAAATGTGGGTAAAAGTGAA
CTACTTATTTTTGTTACACCCAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(412-570)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

77.875

100

0.781
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

77.875

100

0.781
  pilQ Vibrio campbellii strain DS40M4

81.066

95.105

0.771
  pilQ Legionella pneumophila strain ERS1305867

43.04

95.455

0.411
  pilQ Legionella pneumophila strain Lp02

43.04

95.455

0.411
  pilQ Pseudomonas aeruginosa PAK

41.145

97.727

0.402
  comQ Acinetobacter baylyi ADP1

39.51

100

0.395
  pilQ Acinetobacter baumannii strain A118

37.997

100

0.385
  pilQ Acinetobacter baumannii D1279779

37.997

100

0.385