Detailed information NTG0635761

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: LTQ02_RS12380
• Genome accession: NZ_CP089205
• Coordinates: 2723863..2724888 (-)
• Length: 341 a.a.
• NCBI ID: WP_243578739.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain 4_C08b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2718863..2729888

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ02_RS12355 (LTQ02_12355)	aroK	2719704..2720222 (-)	519	WP_004729664.1	shikimate kinase AroK	-
LTQ02_RS12360 (LTQ02_12360)	pilQ	2720399..2722117 (-)	1719	WP_243585238.1	type IV pilus secretin PilQ family protein	Machinery gene
LTQ02_RS12365 (LTQ02_12365)	pilP	2722153..2722671 (-)	519	WP_004729666.1	pilus assembly protein PilP	Machinery gene
LTQ02_RS12370 (LTQ02_12370)	pilO	2722658..2723287 (-)	630	WP_004729667.1	type 4a pilus biogenesis protein PilO	Machinery gene
LTQ02_RS12375 (LTQ02_12375)	pilN	2723280..2723879 (-)	600	WP_102488973.1	PilN domain-containing protein	Machinery gene
LTQ02_RS12380 (LTQ02_12380)	pilM	2723863..2724888 (-)	1026	WP_243578739.1	type IV pilus assembly protein PilM	Machinery gene
LTQ02_RS12385 (LTQ02_12385)	-	2725040..2727602 (+)	2563	Protein_2399	PBP1A family penicillin-binding protein	-
LTQ02_RS12390 (LTQ02_12390)	oxyR	2727715..2728611 (-)	897	WP_243585239.1	DNA-binding transcriptional regulator OxyR	-
LTQ02_RS12395 (LTQ02_12395)	-	2728610..2728789 (+)	180	WP_017077611.1	hypothetical protein	-
LTQ02_RS12400 (LTQ02_12400)	-	2728833..2729561 (+)	729	WP_004729672.1	glutathione peroxidase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38073.62 Da
• Isoelectric Point: 6.9111

>NTDB_id=635761 LTQ02_RS12380 WP_243578739.1 2723863..2724888(-) (pilM) [Vibrio splendidus strain 4_C08b]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGCCNVAISVPDNT
VISKVLQIESELEDREKEFAIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVDSRADALTKAGFKP
VVVDTQAHGLLNIWQMASRLYPEKKNWLLVDVGIDQTSLGIIPQGLAPFYKDIAFGTKDLRNNGAASDIESVFATTEDTH
QFIVNLIEKLKRQLQLYSSGNAQQPISGIWLMGEGASIPMVTEELERQFQLSCESLNPLSLFENKVAKRRRLPTNWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide

• Length: 1026 bp

>NTDB_id=635761 LTQ02_RS12380 WP_243578739.1 2723863..2724888(-) (pilM) [Vibrio splendidus strain 4_C08b]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCTGTGGTACTAAAACCCGTGGGGGAGTT
GTATGCCCTAGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTTAAAGAACTTAGGAAAGGGCTGCCTTTTGGCTGTTGCAACGTCGCCATTTCAGTACCTGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGTGAGTTAGAAGACAGAGAAAAGGAGTTTGCGATCTATCAAACCTTTGCTCA
TCAGTCTCCCTTTCCGATAGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGTTCGACAA
GCAGTTATCAGGTATACGCCACTCGTAAAGAAGTGGTGGATAGCCGAGCGGATGCTTTGACCAAAGCTGGTTTTAAACCT
GTGGTGGTAGACACGCAGGCGCATGGGTTGCTTAACATCTGGCAAATGGCATCGCGCCTGTACCCCGAAAAGAAAAACTG
GCTGCTGGTGGATGTGGGAATCGACCAAACGTCGTTAGGCATTATTCCACAAGGTTTGGCACCGTTTTATAAAGATATCG
CTTTTGGTACCAAAGATCTTCGCAACAATGGTGCTGCAAGTGATATCGAGAGTGTGTTCGCCACCACTGAAGATACACAT
CAATTTATTGTTAATTTGATTGAGAAGCTCAAGCGTCAATTACAGCTCTATTCATCAGGAAATGCACAGCAACCTATCTC
AGGGATCTGGCTGATGGGTGAGGGCGCCAGCATTCCTATGGTAACCGAAGAGCTAGAACGTCAATTTCAGTTGAGTTGCG
AGTCACTGAACCCTTTGTCTCTATTTGAGAATAAGGTGGCGAAGCGACGTCGATTACCAACGAACTGGCAACATTTCGGT
ATTGCGGCGGGTATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAACATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (242-328)

• Type IV pilus assembly protein PilM; (PilM_2) (8-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	54.118	99.707	0.54
pilM	Vibrio campbellii strain DS40M4	48.246	100	0.484