Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LTQ02_RS10975 Genome accession   NZ_CP089205
Coordinates   2468121..2469350 (+) Length   409 a.a.
NCBI ID   WP_243578787.1    Uniprot ID   -
Organism   Vibrio splendidus strain 4_C08b     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2463121..2474350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ02_RS10955 (LTQ02_10955) ampD 2464164..2464763 (-) 600 WP_054541864.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LTQ02_RS10960 (LTQ02_10960) nadC 2464847..2465737 (+) 891 WP_017079961.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LTQ02_RS10965 (LTQ02_10965) pilA 2465993..2466421 (+) 429 WP_243578789.1 pilin Machinery gene
  LTQ02_RS10970 (LTQ02_10970) pilB 2466421..2468106 (+) 1686 WP_243578788.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LTQ02_RS10975 (LTQ02_10975) pilC 2468121..2469350 (+) 1230 WP_243578787.1 type II secretion system F family protein Machinery gene
  LTQ02_RS10980 (LTQ02_10980) pilD 2469418..2470287 (+) 870 WP_004735439.1 A24 family peptidase Machinery gene
  LTQ02_RS10985 (LTQ02_10985) coaE 2470290..2470904 (+) 615 WP_017088713.1 dephospho-CoA kinase -
  LTQ02_RS10990 (LTQ02_10990) zapD 2470931..2471671 (+) 741 WP_017087400.1 cell division protein ZapD -
  LTQ02_RS10995 (LTQ02_10995) yacG 2471753..2471950 (+) 198 WP_004735515.1 DNA gyrase inhibitor YacG -
  LTQ02_RS11000 (LTQ02_11000) rplS 2472302..2472655 (-) 354 WP_004735514.1 50S ribosomal protein L19 -
  LTQ02_RS11005 (LTQ02_11005) trmD 2472715..2473455 (-) 741 WP_004735512.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LTQ02_RS11010 (LTQ02_11010) rimM 2473482..2474036 (-) 555 WP_004735510.1 ribosome maturation factor RimM -
  LTQ02_RS11015 (LTQ02_11015) rpsP 2474061..2474309 (-) 249 WP_004735508.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45352.30 Da        Isoelectric Point: 10.2353

>NTDB_id=635749 LTQ02_RS10975 WP_243578787.1 2468121..2469350(+) (pilC) [Vibrio splendidus strain 4_C08b]
MSSKSKQSQLKNYHWKGINSSGKKVSGQSLALTELEVREKLKEQHIQIKKIKKKSISAITRLTHRVKAKDITILTRQLAT
MLATGVPIVQAIKLVSDNHRKAEMKSILSHICKGVEAGTPISKAMRTASRHFDDLYTDLVATGELSGNLAQVFERLATYR
EKSEQLKSKVIKALIYPAMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYSAIGIGLLIL
SFQQLRQRSYSIRLSTSRLGLRFPILGAVLTKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETA
AGMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=635749 LTQ02_RS10975 WP_243578787.1 2468121..2469350(+) (pilC) [Vibrio splendidus strain 4_C08b]
ATGAGTAGTAAAAGCAAACAATCACAACTAAAAAACTACCATTGGAAGGGAATTAATAGTTCTGGCAAGAAAGTATCAGG
GCAGAGCTTAGCGCTCACCGAATTAGAAGTGCGGGAGAAGCTCAAAGAACAACACATTCAGATTAAGAAAATCAAAAAGA
AAAGCATCTCAGCAATCACTCGTTTAACCCATCGAGTCAAAGCCAAAGACATCACTATTTTGACTCGCCAACTGGCTACC
ATGTTGGCGACTGGTGTGCCGATCGTGCAAGCCATCAAGCTGGTGTCAGACAATCACCGCAAAGCAGAAATGAAATCGAT
TTTATCGCACATCTGCAAAGGTGTAGAAGCCGGCACGCCAATCTCAAAAGCGATGCGAACCGCAAGCCGCCACTTTGATG
ACCTCTATACCGACTTGGTCGCGACAGGCGAACTCTCCGGCAACCTTGCACAAGTATTTGAACGCTTGGCGACCTATCGT
GAAAAGAGTGAGCAACTAAAATCCAAGGTTATAAAAGCTCTCATCTACCCAGCAATGGTTGTAGCGGTCGCCCTTACCGT
TTCCTACTTAATGCTGACCATGGTCATTCCTGAATTTGAATCGATGTTTTCTGGTTTCGGAGCAGACTTACCTTGGTTCA
CCCAGCAAGTGCTTTATCTTTCCCATTGGATGCAGGCTTATAGTTTCTATAGTGCCATCGGTATTGGTTTATTAATTCTG
TCTTTTCAGCAACTGCGTCAGCGATCCTACTCGATTCGACTTTCAACCAGTCGTCTTGGCTTACGCTTTCCTATCTTGGG
TGCTGTTCTCACCAAGGCATCGATTGCAAAGTTCAGCCGAACACTTTCAACCAGTTTCAGTTCTGGGATTCCCATCTTAA
CCAGCCTTAAAACAACGGCTAAAACCGCAGGCAACCTGCATTATGAATCGGCCATCATCGAGGTTCACCGTGAAACTGCC
GCAGGCATGCCGATGTACATTGCAATGCGCAATACCAATGCCTTCCCGGAGATGGTTTTGCAGATGGTGATGATAGGTGA
AGAGTCAGGAAATCTTGATGATATGCTCAATAAAGTCGCTTCCATTTACGAGTTCGAAGTAGACAACACCGTCGATAACC
TAGGTAAGATTCTAGAGCCACTGATCATCGTATTTTTAGGCACCGTAGTTGGTGGACTTGTTGTCGCGATGTACTTACCG
ATCTTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

81.25

97.8

0.795
  pilC Vibrio campbellii strain DS40M4

74.631

99.267

0.741
  pilC Acinetobacter baylyi ADP1

42.543

100

0.425
  pilC Acinetobacter baumannii D1279779

42.574

98.778

0.421
  pilC Legionella pneumophila strain ERS1305867

42.105

97.555

0.411
  pilG Neisseria gonorrhoeae MS11

41.542

98.289

0.408
  pilG Neisseria meningitidis 44/76-A

41.294

98.289

0.406
  pilC Pseudomonas stutzeri DSM 10701

40.594

98.778

0.401