Detailed information NTG0635748

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PALA12_RS23600
• Genome accession: NZ_CP106681
• Coordinates: 5100438..5101586 (-)
• Length: 382 a.a.
• NCBI ID: WP_269974047.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5095438..5106586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA12_RS23580 (PALA12_04669)	-	5096175..5097359 (-)	1185	WP_016852373.1	cystathionine gamma-synthase	-
PALA12_RS23585 (PALA12_04670)	-	5097356..5098729 (-)	1374	WP_003459266.1	pyridoxal-phosphate dependent enzyme	-
PALA12_RS23590 (PALA12_04671)	-	5098972..5099376 (-)	405	WP_003084560.1	NINE protein	-
PALA12_RS23595 (PALA12_04672)	czcD	5099531..5100430 (+)	900	WP_003100957.1	CDF family zinc transporter CzcD	-
PALA12_RS23600 (PALA12_04673)	pilU	5100438..5101586 (-)	1149	WP_269974047.1	type IV pilus ATPase PilU	Machinery gene
PALA12_RS23605 (PALA12_04674)	pilT	5101764..5102798 (-)	1035	WP_003084552.1	type IV pilus twitching motility protein PilT	Machinery gene
PALA12_RS23610 (PALA12_04675)	-	5103013..5103705 (+)	693	WP_003084549.1	YggS family pyridoxal phosphate-dependent enzyme	-
PALA12_RS23615 (PALA12_04676)	proC	5103717..5104538 (+)	822	WP_003142635.1	pyrroline-5-carboxylate reductase	-
PALA12_RS23620 (PALA12_04677)	-	5104549..5105142 (+)	594	WP_003084544.1	YggT family protein	-
PALA12_RS23625	-	5105139..5105435 (+)	297	WP_031628111.1	DUF167 domain-containing protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 42518.78 Da
• Isoelectric Point: 6.7792

>NTDB_id=635748 PALA12_RS23600 WP_269974047.1 5100438..5101586(-) (pilU) [Pseudomonas aeruginosa strain PALA12]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGRVMPVTKTPLSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEELKLPEILKKLALTKRGLVIFVGATGTGKSTSLAAMIGYRNKNSTGHIISIED
PIEYIHQHQGCIVTQREVGLDTDSFEVALKNTLRQAPDVIMIGEVRSRETMDHAVAFAETGHLCLATLHANNANQALERI
IHFFPADRHGQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLLNTPLAADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYQLYTQGEITYEDALAHADSANDLRVMIKLGSESDADHLSSLTQGLSLEITDDDPAGRRFR

Nucleotide

• Length: 1149 bp

>NTDB_id=635748 PALA12_RS23600 WP_269974047.1 5100438..5101586(-) (pilU) [Pseudomonas aeruginosa strain PALA12]
ATGGAATTCGAAAAGCTGCTGCGCCTGATGGTGGAAAAGGGCGGCTCCGACCTGTTCATCACCGCCGGCGTACCGCCGTC
GATGAAGGTCAACGGCCGGGTGATGCCGGTGACCAAGACGCCGCTGTCGCCGGAGCAGACCCGCGAGACCGTGCTAGGCG
TGATGAACGAGCAGCAGCGCCGCGATTTCGCCGAGAACCATGAGTGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGGGTCAGTGCCTTCTACCAGCGCAACCTGGTGGGCATGGTATTGCGCCGGATCGAGACCAACATCCCGACCCTGGA
AGAGCTGAAGCTCCCGGAAATCCTCAAGAAGCTGGCGCTGACCAAGCGCGGCCTGGTGATCTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAACTCCACCGGGCACATCATCTCCATCGAGGAC
CCGATCGAGTACATCCACCAGCACCAGGGCTGCATCGTCACCCAGCGCGAGGTGGGGCTGGACACCGACTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCTCGCGGGAGACCATGGACCACG
CCGTGGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCGACCCTGCACGCGAACAACGCCAACCAGGCGCTGGAGCGGATC
ATCCACTTCTTCCCGGCCGACCGTCATGGCCAGGTGTGGATGGACCTGTCGCTGAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCCGACGGCAAGGGGCGGCGGGCGGTGATCGAGGTGCTGCTGAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAGCCGCTGATGAAGCGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACCAGCTCTACACCCAGGGCGAGATCACCTACGAGGACGCCCTGGCCCACGCCGACTCGGCCAACGACCTGCGCGT
GATGATCAAGCTCGGTTCGGAAAGCGACGCCGACCACCTGTCGAGCCTGACCCAGGGCCTGAGCCTGGAAATCACCGACG
ACGACCCTGCCGGCCGGCGCTTCCGCTGA

Domains

Predicted by InterProScan.

• Type II/IV secretion system protein (T2SSE) (111-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	88.22	100	0.882
pilU	Acinetobacter baylyi ADP1	64.986	93.455	0.607
pilU	Vibrio cholerae strain A1552	60	91.623	0.55
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.068	88.743	0.382