Detailed information NTG0635750

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LTQ02_RS10980
• Genome accession: NZ_CP089205
• Coordinates: 2469418..2470287 (+)
• Length: 289 a.a.
• NCBI ID: WP_004735439.1
• Uniprot ID: -
• Organism: Vibrio splendidus strain 4_C08b
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2464418..2475287

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ02_RS10960 (LTQ02_10960)	nadC	2464847..2465737 (+)	891	WP_017079961.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LTQ02_RS10965 (LTQ02_10965)	pilA	2465993..2466421 (+)	429	WP_243578789.1	pilin	Machinery gene
LTQ02_RS10970 (LTQ02_10970)	pilB	2466421..2468106 (+)	1686	WP_243578788.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LTQ02_RS10975 (LTQ02_10975)	pilC	2468121..2469350 (+)	1230	WP_243578787.1	type II secretion system F family protein	Machinery gene
LTQ02_RS10980 (LTQ02_10980)	pilD	2469418..2470287 (+)	870	WP_004735439.1	A24 family peptidase	Machinery gene
LTQ02_RS10985 (LTQ02_10985)	coaE	2470290..2470904 (+)	615	WP_017088713.1	dephospho-CoA kinase	-
LTQ02_RS10990 (LTQ02_10990)	zapD	2470931..2471671 (+)	741	WP_017087400.1	cell division protein ZapD	-
LTQ02_RS10995 (LTQ02_10995)	yacG	2471753..2471950 (+)	198	WP_004735515.1	DNA gyrase inhibitor YacG	-
LTQ02_RS11000 (LTQ02_11000)	rplS	2472302..2472655 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
LTQ02_RS11005 (LTQ02_11005)	trmD	2472715..2473455 (-)	741	WP_004735512.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LTQ02_RS11010 (LTQ02_11010)	rimM	2473482..2474036 (-)	555	WP_004735510.1	ribosome maturation factor RimM	-
LTQ02_RS11015 (LTQ02_11015)	rpsP	2474061..2474309 (-)	249	WP_004735508.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32585.83 Da
• Isoelectric Point: 7.6347

>NTDB_id=635750 LTQ02_RS10980 WP_004735439.1 2469418..2470287(+) (pilD) [Vibrio splendidus strain 4_C08b]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRII
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVIGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=635750 LTQ02_RS10980 WP_004735439.1 2469418..2470287(+) (pilD) [Vibrio splendidus strain 4_C08b]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGCAGCTTCCTCAA
CGTAGTCATACACCGTTTACCGATAATGATGGAACGAGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGAAAGTTCAATCTCAGTATCCCTCGTTCTACCTGCCCGAAATGTAAAACCCAATTAAGAATCATC
GACAATATTCCAGTATTAAGTTGGTTGTTCTTAAAGGGCAAGTGCCATAGCTGTGCTAACCCAATCAGCGCTCGTTACCC
ATTGGTCGAGTTACTTACGGCAATACTTTGTACCGTAGTCGCGAGCCACTTTGGTTTCAGTTACTACGCCATTGCTTTGA
TTTTTTTCACGTTTGCATTGATTACCGCAACCTTTATCGATCTCGATACTATGCTGTTGCCTGATCAAATTACCTTGCCT
TTAGTTTGGTCTGGTATCGCGTTAGCTCTGTTTAATATCAGCCCTGTATCGCTTCAAGATTCAGTGATTGGCGCAATGGC
AGGCTACCTAGCACTTTGGTCGGTTTATTGGCTGTTCAAGCTGTTAACAGGCAAAGAAGGCATGGGTTACGGCGACTTCA
AACTTCTGGCTGCGCTTGGCGCCTGGCTTGGCTGGCAGCACCTACCAATGATCATTCTTTTGTCGTCGCTGGTCGGCTTA
GTTTTCGGATTGATTCAACTTCGCTTGAAACAACAAGGCATAGATAAAGCCTTTCCATTTGGACCTTACCTTGCGATTGC
GGGTTGGGTGAGTTTGATGTGGGGCAACGACATCATGGGCTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.74	100	0.747
pilD	Vibrio cholerae strain A1552	69.444	99.654	0.692
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443