Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LTQ02_RS10965 | Genome accession | NZ_CP089205 |
| Coordinates | 2465993..2466421 (+) | Length | 142 a.a. |
| NCBI ID | WP_243578789.1 | Uniprot ID | - |
| Organism | Vibrio splendidus strain 4_C08b | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2460993..2471421
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LTQ02_RS10950 (LTQ02_10950) | pdhR | 2462922..2463683 (-) | 762 | WP_004735446.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| LTQ02_RS10955 (LTQ02_10955) | ampD | 2464164..2464763 (-) | 600 | WP_054541864.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| LTQ02_RS10960 (LTQ02_10960) | nadC | 2464847..2465737 (+) | 891 | WP_017079961.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| LTQ02_RS10965 (LTQ02_10965) | pilA | 2465993..2466421 (+) | 429 | WP_243578789.1 | pilin | Machinery gene |
| LTQ02_RS10970 (LTQ02_10970) | pilB | 2466421..2468106 (+) | 1686 | WP_243578788.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LTQ02_RS10975 (LTQ02_10975) | pilC | 2468121..2469350 (+) | 1230 | WP_243578787.1 | type II secretion system F family protein | Machinery gene |
| LTQ02_RS10980 (LTQ02_10980) | pilD | 2469418..2470287 (+) | 870 | WP_004735439.1 | A24 family peptidase | Machinery gene |
| LTQ02_RS10985 (LTQ02_10985) | coaE | 2470290..2470904 (+) | 615 | WP_017088713.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14892.87 Da Isoelectric Point: 5.8099
>NTDB_id=635747 LTQ02_RS10965 WP_243578789.1 2465993..2466421(+) (pilA) [Vibrio splendidus strain 4_C08b]
MNNKNKRTTQKGFTLIELMIVVAVIGVLATIAVPQYQNYVKKSEAASGLATLRALVTNIDNFHAENGTFPTDVGDVGGAS
DMNKLGTIALTAASGSTSSQAKFTFGANSTLASTETIILEKDGTSGLWTCTETTDITIKNCP
MNNKNKRTTQKGFTLIELMIVVAVIGVLATIAVPQYQNYVKKSEAASGLATLRALVTNIDNFHAENGTFPTDVGDVGGAS
DMNKLGTIALTAASGSTSSQAKFTFGANSTLASTETIILEKDGTSGLWTCTETTDITIKNCP
Nucleotide
Download Length: 429 bp
>NTDB_id=635747 LTQ02_RS10965 WP_243578789.1 2465993..2466421(+) (pilA) [Vibrio splendidus strain 4_C08b]
ATGAACAACAAAAACAAAAGAACAACTCAGAAAGGTTTTACGCTGATTGAATTGATGATTGTAGTGGCAGTGATTGGGGT
CTTAGCCACAATTGCAGTCCCCCAGTACCAAAATTACGTAAAAAAATCTGAAGCCGCATCAGGGCTTGCAACTCTGCGAG
CATTAGTAACAAATATAGACAATTTTCATGCTGAAAATGGTACTTTTCCGACTGATGTTGGGGATGTTGGTGGAGCTTCA
GATATGAATAAATTAGGAACTATAGCTCTTACTGCCGCATCTGGTTCTACAAGTTCTCAAGCTAAGTTTACTTTTGGTGC
CAATAGTACACTTGCATCGACCGAAACGATTATTCTAGAAAAAGACGGAACATCAGGGCTCTGGACTTGTACCGAAACGA
CTGATATCACAATCAAAAACTGTCCATAA
ATGAACAACAAAAACAAAAGAACAACTCAGAAAGGTTTTACGCTGATTGAATTGATGATTGTAGTGGCAGTGATTGGGGT
CTTAGCCACAATTGCAGTCCCCCAGTACCAAAATTACGTAAAAAAATCTGAAGCCGCATCAGGGCTTGCAACTCTGCGAG
CATTAGTAACAAATATAGACAATTTTCATGCTGAAAATGGTACTTTTCCGACTGATGTTGGGGATGTTGGTGGAGCTTCA
GATATGAATAAATTAGGAACTATAGCTCTTACTGCCGCATCTGGTTCTACAAGTTCTCAAGCTAAGTTTACTTTTGGTGC
CAATAGTACACTTGCATCGACCGAAACGATTATTCTAGAAAAAGACGGAACATCAGGGCTCTGGACTTGTACCGAAACGA
CTGATATCACAATCAAAAACTGTCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
48.993 |
100 |
0.514 |
| pilA | Vibrio cholerae C6706 |
48.993 |
100 |
0.514 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.993 |
100 |
0.514 |
| pilA | Pseudomonas aeruginosa PAK |
45.255 |
96.479 |
0.437 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
41.844 |
99.296 |
0.415 |
| pilA | Acinetobacter baumannii strain A118 |
39.706 |
95.775 |
0.38 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.13 |
97.183 |
0.38 |