Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LSI69_RS19395 Genome accession   NZ_CP089032
Coordinates   3709398..3710027 (-) Length   209 a.a.
NCBI ID   WP_000839159.1    Uniprot ID   A0AAV3HCB2
Organism   Escherichia coli O157:H7 strain 6535WT     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3698320..3721201 3709398..3710027 within 0


Gene organization within MGE regions


Location: 3698320..3721201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSI69_RS19335 (LSI69_19335) - 3698320..3699339 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  LSI69_RS19340 (LSI69_19340) yccA 3699747..3700406 (+) 660 WP_000375128.1 FtsH protease modulator YccA -
  LSI69_RS19345 (LSI69_19345) tusE 3700497..3700826 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  LSI69_RS19350 (LSI69_19350) yccX 3700823..3701101 (-) 279 WP_000048252.1 acylphosphatase -
  LSI69_RS19355 (LSI69_19355) rlmI 3701196..3702386 (+) 1191 WP_000116288.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  LSI69_RS19360 (LSI69_19360) hspQ 3702444..3702761 (+) 318 WP_001295356.1 heat shock protein HspQ -
  LSI69_RS19365 (LSI69_19365) yccU 3702806..3703219 (-) 414 WP_000665217.1 CoA-binding protein -
  LSI69_RS19370 (LSI69_19370) csgI 3703392..3704054 (+) 663 WP_000847791.1 DUF2057 family protein -
  LSI69_RS19375 (LSI69_19375) mgsA 3704150..3704608 (+) 459 WP_000424181.1 methylglyoxal synthase -
  LSI69_RS19380 (LSI69_19380) helD 3704640..3706694 (-) 2055 WP_001301436.1 DNA helicase IV -
  LSI69_RS19385 (LSI69_19385) yccF 3706817..3707263 (+) 447 WP_001261230.1 YccF domain-containing protein -
  LSI69_RS19390 (LSI69_19390) yccS 3707273..3709435 (+) 2163 WP_000875023.1 YccS family putative transporter -
  LSI69_RS19395 (LSI69_19395) sxy/tfoX 3709398..3710027 (-) 630 WP_000839159.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LSI69_RS19400 (LSI69_19400) sulA 3710246..3710755 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LSI69_RS19405 (LSI69_19405) ompA 3711112..3712152 (+) 1041 WP_000750416.1 porin OmpA -
  LSI69_RS19410 (LSI69_19410) matP 3712228..3712680 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LSI69_RS19415 (LSI69_19415) ycbZ 3712866..3714626 (+) 1761 WP_000156526.1 AAA family ATPase -
  LSI69_RS19420 (LSI69_19420) fabA 3714695..3715213 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  LSI69_RS19425 (LSI69_19425) rmf 3715283..3715450 (-) 168 WP_000828648.1 ribosome modulation factor -
  LSI69_RS19430 (LSI69_19430) pqiC 3715706..3716269 (-) 564 WP_000759107.1 membrane integrity-associated transporter subunit PqiC -
  LSI69_RS19435 (LSI69_19435) pqiB 3716266..3717906 (-) 1641 WP_000445550.1 intermembrane transport protein PqiB -
  LSI69_RS19440 (LSI69_19440) pqiA 3717911..3719164 (-) 1254 WP_000333170.1 membrane integrity-associated transporter subunit PqiA -
  LSI69_RS19445 (LSI69_19445) uup 3719294..3721201 (-) 1908 WP_000053083.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.05 Da        Isoelectric Point: 9.1942

>NTDB_id=634665 LSI69_RS19395 WP_000839159.1 3709398..3710027(-) (sxy/tfoX) [Escherichia coli O157:H7 strain 6535WT]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=634665 LSI69_RS19395 WP_000839159.1 3709398..3710027(-) (sxy/tfoX) [Escherichia coli O157:H7 strain 6535WT]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995