Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LRO84_RS16905 Genome accession   NZ_CP088955
Coordinates   3577017..3578243 (+) Length   408 a.a.
NCBI ID   WP_004640845.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ARu19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3572017..3583243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO84_RS16870 (LRO84_16870) rimP 3572684..3573208 (-) 525 WP_005037183.1 ribosome maturation factor RimP -
  LRO84_RS16890 (LRO84_16890) secG 3573849..3574178 (-) 330 WP_231762040.1 preprotein translocase subunit SecG -
  LRO84_RS16895 (LRO84_16895) tpiA 3574191..3574985 (-) 795 WP_231762041.1 triose-phosphate isomerase -
  LRO84_RS16900 (LRO84_16900) pilB 3575277..3576989 (+) 1713 WP_231762042.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LRO84_RS16905 (LRO84_16905) pilC 3577017..3578243 (+) 1227 WP_004640845.1 type II secretion system F family protein Machinery gene
  LRO84_RS18730 pilD 3578243..3579103 (+) 861 WP_269449639.1 prepilin peptidase Machinery gene
  LRO84_RS16920 (LRO84_16920) coaE 3579105..3579701 (+) 597 WP_003654573.1 dephospho-CoA kinase -
  LRO84_RS16925 (LRO84_16925) - 3579698..3580612 (-) 915 WP_231762043.1 DMT family transporter -
  LRO84_RS16930 (LRO84_16930) rlmB 3580646..3581395 (-) 750 WP_005037200.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LRO84_RS16935 (LRO84_16935) - 3581498..3581824 (-) 327 WP_003654567.1 pyrimidine/purine nucleoside phosphorylase -
  LRO84_RS16940 (LRO84_16940) - 3581901..3583211 (-) 1311 WP_231762044.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45040.54 Da        Isoelectric Point: 9.9566

>NTDB_id=634222 LRO84_RS16905 WP_004640845.1 3577017..3578243(+) (pilC) [Acinetobacter calcoaceticus strain ARu19]
MTVKKAQLMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFMEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=634222 LRO84_RS16905 WP_004640845.1 3577017..3578243(+) (pilC) [Acinetobacter calcoaceticus strain ARu19]
ATGACTGTCAAAAAGGCACAATTGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTCGATATCACGATTTTTACCCGACAACTTGCAACC
ATGATGAAAGCTGGTGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGTTTAGAAAACCCAGCGATGCGCGAGGT
GGTACTCGGTATTAAAGGTGAAGTTGAAGGTGGTAGTACTTTTGCATCAGCTTTAAGAAAGTATCCTCAGCACTTCGACA
AATTATTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGCTGGATCGTGTAGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTCTTCCAAGACCTGTTTTCTTCCTTTGGCGCAGATTTGCCTGCGTTTA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGTGCAATTATTGCT
GCTTTTATGGAAGCTAAAAAGCGCAGTAAAAAATTCCGTGATGGTTTAGACAAACTCACGCTTAAGTTACCTATCTTTGG
TGATCTGGTTTACAAGGCGATTATTGCCCGCTACAGCCGTACTTTAGCAACCACTTTTGCAGCAGGTGTTCCGCTCATTG
ATGCGCTTGAATCAACAGCAGGTGCAACCAATAATGTTATTTATGAACAAGCTGTAATGAAAATTCGTGAAGATGTTGCA
ACAGGTCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGACAAAGTTGCCACCTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGAGTACTCGTAGGCGGTCTGGTTATTGCTATGTATCTTCCA
ATTTTCCAAATGGGTTCAGTCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

60.453

97.304

0.588
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

45.98

97.549

0.449
  pilG Neisseria meningitidis 44/76-A

45.98

97.549

0.449
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.908

98.284

0.363