Detailed information NTG0634230

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LRO84_RS18730
• Genome accession: NZ_CP088955
• Coordinates: 3578243..3579103 (+)
• Length: 286 a.a.
• NCBI ID: WP_269449639.1
• Uniprot ID: -
• Organism: Acinetobacter calcoaceticus strain ARu19
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3573243..3584103

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO84_RS16890 (LRO84_16890)	secG	3573849..3574178 (-)	330	WP_231762040.1	preprotein translocase subunit SecG	-
LRO84_RS16895 (LRO84_16895)	tpiA	3574191..3574985 (-)	795	WP_231762041.1	triose-phosphate isomerase	-
LRO84_RS16900 (LRO84_16900)	pilB	3575277..3576989 (+)	1713	WP_231762042.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LRO84_RS16905 (LRO84_16905)	pilC	3577017..3578243 (+)	1227	WP_004640845.1	type II secretion system F family protein	Machinery gene
LRO84_RS18730	pilD	3578243..3579103 (+)	861	WP_269449639.1	prepilin peptidase	Machinery gene
LRO84_RS16920 (LRO84_16920)	coaE	3579105..3579701 (+)	597	WP_003654573.1	dephospho-CoA kinase	-
LRO84_RS16925 (LRO84_16925)	-	3579698..3580612 (-)	915	WP_231762043.1	DMT family transporter	-
LRO84_RS16930 (LRO84_16930)	rlmB	3580646..3581395 (-)	750	WP_005037200.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LRO84_RS16935 (LRO84_16935)	-	3581498..3581824 (-)	327	WP_003654567.1	pyrimidine/purine nucleoside phosphorylase	-
LRO84_RS16940 (LRO84_16940)	-	3581901..3583211 (-)	1311	WP_231762044.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32062.48 Da
• Isoelectric Point: 6.4577

>NTDB_id=634230 LRO84_RS18730 WP_269449639.1 3578243..3579103(+) (pilD) [Acinetobacter calcoaceticus strain ARu19]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLDPEQPIIDHEKLTLSKPASSCPQCHQP
IRWYQNIPVISWLVLKGKCGHCEHAISMRYPAIELLTMACSLVVVMVFGPTIQMLFGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTTPTSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=634230 LRO84_RS18730 WP_269449639.1 3578243..3579103(+) (pilD) [Acinetobacter calcoaceticus strain ARu19]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTGTGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGCTACTCG
ATCCTGAACAACCAATCATTGACCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGCCCCCAATGTCACCAGCCC
ATTCGCTGGTATCAAAATATTCCTGTCATAAGTTGGTTAGTTTTAAAAGGTAAATGTGGGCATTGTGAGCATGCAATTAG
CATGCGCTACCCAGCCATCGAACTATTAACAATGGCATGTTCACTGGTTGTGGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTAGTCCTGACTTGGATTTTAATTGCTTTAACATTTATTGATTTTGATACTCAGCTGCTACCCGACCGT
TTTACCTTACCTTTGGCCGCACTGGGTTTAGGCATTAATACCTTTAGTATATACACCACACCCACTTCAGCTATTTGGGG
TTACTTAATTGGTTTTTTATGCCTGTGGATTGTTTATTACCTATTTAAAGTAATTACTGGCAAAGAAGGCATGGGCTACG
GCGACTTTAAGTTGCTTGCGGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCCTATATTGCCAT
TGCAGGCTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	94.755	100	0.948
pilD	Acinetobacter baumannii D1279779	94.406	100	0.944
pilD	Vibrio cholerae strain A1552	52.381	95.455	0.5
pilD	Vibrio campbellii strain DS40M4	51.648	95.455	0.493
pilD	Neisseria gonorrhoeae MS11	46.212	92.308	0.427