Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LRO55_RS16905 Genome accession   NZ_CP088954
Coordinates   3590852..3592078 (+) Length   408 a.a.
NCBI ID   WP_231764179.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain ACa13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3585852..3597078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO55_RS16870 (LRO55_16870) rimP 3586520..3587044 (-) 525 WP_005037183.1 ribosome maturation factor RimP -
  LRO55_RS16890 (LRO55_16890) secG 3587685..3588014 (-) 330 WP_005037186.1 preprotein translocase subunit SecG -
  LRO55_RS16895 (LRO55_16895) tpiA 3588027..3588821 (-) 795 WP_003654580.1 triose-phosphate isomerase -
  LRO55_RS16900 (LRO55_16900) pilB 3589113..3590825 (+) 1713 WP_231764178.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LRO55_RS16905 (LRO55_16905) pilC 3590852..3592078 (+) 1227 WP_231764179.1 type II secretion system F family protein Machinery gene
  LRO55_RS18755 pilD 3592078..3592938 (+) 861 WP_080026205.1 prepilin peptidase Machinery gene
  LRO55_RS16920 (LRO55_16920) coaE 3592940..3593536 (+) 597 WP_004640841.1 dephospho-CoA kinase -
  LRO55_RS16925 (LRO55_16925) - 3593533..3594447 (-) 915 WP_231764180.1 DMT family transporter -
  LRO55_RS16930 (LRO55_16930) rlmB 3594482..3595231 (-) 750 WP_005037200.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LRO55_RS16935 (LRO55_16935) - 3595334..3595660 (-) 327 WP_003654567.1 pyrimidine/purine nucleoside phosphorylase -
  LRO55_RS16940 (LRO55_16940) - 3595737..3597047 (-) 1311 WP_231764181.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45004.47 Da        Isoelectric Point: 9.9566

>NTDB_id=634175 LRO55_RS16905 WP_231764179.1 3590852..3592078(+) (pilC) [Acinetobacter calcoaceticus strain ACa13]
MTVKKAQLMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=634175 LRO55_RS16905 WP_231764179.1 3590852..3592078(+) (pilC) [Acinetobacter calcoaceticus strain ACa13]
ATGACTGTCAAAAAGGCACAATTGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTATCAACGCTCGATATCACGATTTTTACCCGACAACTTGCAACC
ATGATGAAAGCTGGCGTGCCACTGGTACAAGGCTTTGAAATTGTGGCGGAAGGTTTAGAAAATCCAGCGATGCGCGAGGT
GGTACTCGGTATTAAAGGTGAAGTTGAAGGTGGTAGTACTTTTGCATCAGCTTTAAGAAAGTATCCTCAGCACTTCGACA
AACTGTTTTGTTCTCTTGTAGAGTCCGGCGAACAATCTGGTGCGCTTGAAACCATGCTGGATCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAGAAAATCAAGAAAGCCATGAAATACCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCCGTCTTCCAAGATCTGTTTTCTTCCTTTGGCGCAGATCTACCTGCTTTTA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTCTGATTATTGTGATTGGGGCAATCATTGCC
GCATTTCTGGAAGCTAAAAAGCGTAGTAAAAAATTCCGTGATGGTTTAGACAAACTTACCCTTAAACTGCCTATCTTTGG
TGATTTAGTTTATAAGGCGATTATTGCCCGCTACAGCCGTACTTTAGCAACCACTTTTGCAGCAGGTGTTCCGCTCATTG
ATGCGCTTGAATCAACAGCAGGTGCAACCAATAATGTTATTTATGAACAAGCTGTCATGAAAATTCGTGAAGATGTTGCA
ACAGGTCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCTATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGACAAAGTTGCCACCTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTCGTAGGCGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

86.029

100

0.86
  pilC Pseudomonas stutzeri DSM 10701

60.453

97.304

0.588
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365