Detailed information NTG0634184

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LRO55_RS18755
• Genome accession: NZ_CP088954
• Coordinates: 3592078..3592938 (+)
• Length: 286 a.a.
• NCBI ID: WP_080026205.1
• Uniprot ID: -
• Organism: Acinetobacter calcoaceticus strain ACa13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3587078..3597938

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LRO55_RS16890 (LRO55_16890)	secG	3587685..3588014 (-)	330	WP_005037186.1	preprotein translocase subunit SecG	-
LRO55_RS16895 (LRO55_16895)	tpiA	3588027..3588821 (-)	795	WP_003654580.1	triose-phosphate isomerase	-
LRO55_RS16900 (LRO55_16900)	pilB	3589113..3590825 (+)	1713	WP_231764178.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LRO55_RS16905 (LRO55_16905)	pilC	3590852..3592078 (+)	1227	WP_231764179.1	type II secretion system F family protein	Machinery gene
LRO55_RS18755	pilD	3592078..3592938 (+)	861	WP_080026205.1	prepilin peptidase	Machinery gene
LRO55_RS16920 (LRO55_16920)	coaE	3592940..3593536 (+)	597	WP_004640841.1	dephospho-CoA kinase	-
LRO55_RS16925 (LRO55_16925)	-	3593533..3594447 (-)	915	WP_231764180.1	DMT family transporter	-
LRO55_RS16930 (LRO55_16930)	rlmB	3594482..3595231 (-)	750	WP_005037200.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LRO55_RS16935 (LRO55_16935)	-	3595334..3595660 (-)	327	WP_003654567.1	pyrimidine/purine nucleoside phosphorylase	-
LRO55_RS16940 (LRO55_16940)	-	3595737..3597047 (-)	1311	WP_231764181.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32070.51 Da
• Isoelectric Point: 6.9121

>NTDB_id=634184 LRO55_RS18755 WP_080026205.1 3592078..3592938(+) (pilD) [Acinetobacter calcoaceticus strain ACa13]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEHPIIDHEKLTLSKPASSCPQCHQP
IRWYQNIPVISWLVLKGKCGHCEHAISMRYPAIELLTMACSLVVIMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFSIYTTPTSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=634184 LRO55_RS18755 WP_080026205.1 3592078..3592938(+) (pilD) [Acinetobacter calcoaceticus strain ACa13]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCACTATTGAGCCTGTGTATTGG
TAGCTTTTTGAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATGTTACTCA
ATCCTGAACACCCCATTATTGACCATGAAAAGCTAACATTAAGTAAGCCCGCTTCATCATGCCCCCAATGTCACCAGCCC
ATTCGCTGGTATCAAAATATTCCTGTCATAAGTTGGTTGGTTTTAAAAGGTAAATGTGGGCATTGTGAGCATGCAATTAG
CATGCGCTACCCAGCCATCGAACTATTAACAATGGCATGTTCACTGGTTGTGATCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTAGTCCTGACTTGGGTTTTAATTGCTTTAACATTTATTGATTTTGATACTCAGCTGCTACCCGACCGT
TTTACCTTACCTTTGGCCGCACTGGGTTTAGGCATTAATACCTTTAGCATCTACACCACACCCACTTCAGCTATTTGGGG
TTACTTAATTGGTTTTTTATGCCTGTGGATTGTGTATTACCTATTTAAAGTAATTACTGGCAAAGAAGGCATGGGCTACG
GCGACTTTAAGTTGCTTGCGGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTACTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCGTATATTGCCAT
TGCAGGCTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	94.755	100	0.948
pilD	Acinetobacter baumannii D1279779	94.406	100	0.944
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Vibrio cholerae strain A1552	52.747	95.455	0.503
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434