Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LRR79_RS07950 Genome accession   NZ_CP088953
Coordinates   1930226..1931443 (-) Length   405 a.a.
NCBI ID   WP_231759820.1    Uniprot ID   -
Organism   Microbulbifer elongatus strain DSM 6810     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1925226..1936443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRR79_RS07920 - 1925599..1927056 (+) 1458 WP_269455110.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  LRR79_RS07925 tsaA 1927177..1927884 (+) 708 WP_231759815.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  LRR79_RS07930 - 1927908..1928378 (+) 471 WP_231759816.1 protein disulfide oxidoreductase -
  LRR79_RS07935 yacG 1928479..1928751 (-) 273 WP_407665232.1 DNA gyrase inhibitor YacG -
  LRR79_RS07940 coaE 1928705..1929319 (-) 615 WP_231759818.1 dephospho-CoA kinase -
  LRR79_RS07945 pilD 1929324..1930208 (-) 885 WP_231759819.1 A24 family peptidase Machinery gene
  LRR79_RS07950 pilC 1930226..1931443 (-) 1218 WP_231759820.1 type II secretion system F family protein Machinery gene
  LRR79_RS07955 pilB 1931478..1933190 (-) 1713 WP_231759821.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LRR79_RS07960 pilE 1933607..1934020 (+) 414 WP_231759822.1 pilin Machinery gene
  LRR79_RS07965 - 1934081..1936057 (+) 1977 WP_231759823.1 sulfatase-like hydrolase/transferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43584.31 Da        Isoelectric Point: 9.6630

>NTDB_id=634133 LRR79_RS07950 WP_231759820.1 1930226..1931443(-) (pilC) [Microbulbifer elongatus strain DSM 6810]
MAKAAATAVTYIYKGVDAKGNKVEGEVNSANPALIKAQLRRQGIIANKVQKKPKPLFGGNKKVKPGDIAVFTRQMATMMK
AGVPLVQSFEIVADGLDNEGLKDLIYKIRDDVASGTAFADALRKHPLYFDDLFCNLVASGEQSGALETMLGRIATYKEKT
ESLKAKIKKAMTYPIAVLVVAVVVTAILLVKVVPQFADTFSSFGADLPAFTLFVLSISEWMQNNWLLAFIAIVIGVGGTL
EAKKRNKKVANFFDKLMLRLPILGQITYNSIAARFARTLSTTFAAGVPLIDALKSVAGATGNVVYEKDTLRIRDSVATGV
PLNGAMRASGLYPTMLVQMAAIGEESGALDEMLSKAADFYEEAVDNMVDNLTTLLEPMIMAILGILVGGLMIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=634133 LRR79_RS07950 WP_231759820.1 1930226..1931443(-) (pilC) [Microbulbifer elongatus strain DSM 6810]
ATGGCCAAAGCCGCCGCTACAGCAGTGACCTATATTTATAAGGGTGTGGATGCCAAGGGCAACAAGGTTGAAGGGGAAGT
AAACAGTGCCAACCCCGCCCTGATTAAAGCCCAGCTTCGCCGTCAGGGAATTATTGCCAATAAGGTACAAAAAAAGCCAA
AGCCATTATTTGGCGGCAATAAAAAAGTCAAGCCCGGTGATATCGCCGTGTTCACACGGCAAATGGCAACCATGATGAAA
GCCGGTGTACCCTTGGTGCAAAGTTTTGAAATCGTCGCCGACGGTCTGGATAATGAAGGTCTAAAAGATCTCATCTACAA
AATACGTGATGATGTCGCTTCGGGCACGGCGTTCGCCGATGCTCTACGCAAGCATCCTCTTTATTTCGATGACTTGTTCT
GTAACCTTGTTGCCTCTGGTGAACAGTCGGGTGCGCTAGAAACCATGCTCGGGCGTATCGCCACATATAAAGAAAAAACC
GAGTCTTTAAAAGCCAAAATCAAAAAGGCGATGACTTACCCGATTGCTGTTTTGGTAGTAGCTGTCGTGGTGACTGCAAT
TCTACTCGTTAAAGTGGTGCCTCAATTTGCCGATACCTTTTCCAGCTTTGGTGCTGATCTGCCGGCATTTACACTGTTTG
TATTGAGCATTTCCGAATGGATGCAAAACAACTGGCTTTTAGCCTTTATTGCAATTGTAATTGGAGTCGGCGGAACCTTG
GAGGCTAAAAAGCGCAATAAGAAAGTCGCAAATTTTTTCGACAAGCTAATGTTACGCCTCCCAATCCTTGGGCAAATCAC
TTACAACTCAATCGCCGCTCGCTTTGCTCGAACGTTGTCAACCACGTTTGCCGCGGGCGTACCATTAATTGATGCATTAA
AGTCGGTTGCTGGAGCTACCGGCAATGTGGTTTATGAAAAGGATACATTGAGAATAAGAGACTCAGTCGCTACTGGTGTC
CCACTGAATGGTGCGATGAGAGCATCGGGGCTTTATCCAACTATGCTAGTTCAGATGGCCGCAATTGGTGAAGAGTCCGG
TGCACTGGATGAGATGCTTTCTAAAGCTGCCGACTTCTATGAAGAGGCAGTGGACAACATGGTAGATAACCTTACCACGC
TGCTAGAGCCAATGATCATGGCAATCCTTGGAATTCTCGTCGGCGGCCTGATGATTGCCATGTACCTCCCGATTTTCCAA
TTGGGCAACGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.728

100

0.617
  pilC Acinetobacter baylyi ADP1

60.099

100

0.602
  pilC Acinetobacter baumannii D1279779

60

100

0.6
  pilC Legionella pneumophila strain ERS1305867

56.404

100

0.565
  pilG Neisseria gonorrhoeae MS11

42.424

97.778

0.415
  pilG Neisseria meningitidis 44/76-A

42.172

97.778

0.412
  pilC Vibrio cholerae strain A1552

41.162

97.778

0.402
  pilC Vibrio campbellii strain DS40M4

40.25

98.765

0.398