Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LRR79_RS07945 Genome accession   NZ_CP088953
Coordinates   1929324..1930208 (-) Length   294 a.a.
NCBI ID   WP_231759819.1    Uniprot ID   -
Organism   Microbulbifer elongatus strain DSM 6810     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1924324..1935208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRR79_RS07920 - 1925599..1927056 (+) 1458 WP_269455110.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  LRR79_RS07925 tsaA 1927177..1927884 (+) 708 WP_231759815.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  LRR79_RS07930 - 1927908..1928378 (+) 471 WP_231759816.1 protein disulfide oxidoreductase -
  LRR79_RS07935 yacG 1928479..1928751 (-) 273 WP_407665232.1 DNA gyrase inhibitor YacG -
  LRR79_RS07940 coaE 1928705..1929319 (-) 615 WP_231759818.1 dephospho-CoA kinase -
  LRR79_RS07945 pilD 1929324..1930208 (-) 885 WP_231759819.1 A24 family peptidase Machinery gene
  LRR79_RS07950 pilC 1930226..1931443 (-) 1218 WP_231759820.1 type II secretion system F family protein Machinery gene
  LRR79_RS07955 pilB 1931478..1933190 (-) 1713 WP_231759821.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LRR79_RS07960 pilE 1933607..1934020 (+) 414 WP_231759822.1 pilin Machinery gene

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 32289.21 Da        Isoelectric Point: 7.7398

>NTDB_id=634132 LRR79_RS07945 WP_231759819.1 1929324..1930208(-) (pilD) [Microbulbifer elongatus strain DSM 6810]
MLETINSHPALLISSAFILGLLIGSFLNVVIHRLPIMMEREYQRDFYAYFEKTPSPEEQKALAQPYNLILPHSHCPGCKQ
EIKPWQNIPIISYLLLRGKCGNCGTAISKRYPLVELATGILTAVVVWQLGFTWQALAGVFFTWALVALTGIDFDKQLLPD
SVTLPLLWAGLLINLWGVFAPLQDAVIGAIAGYLALWSVFHIFKLVTGKEGMGAGDFKILAAIGAWFGWQVLPLVILLSA
AVGALAGITWTLISGRDKNLPIAFGPYLAGAAWIAMLWGEQIMGWYFRVSGLSS

Nucleotide


Download         Length: 885 bp        

>NTDB_id=634132 LRR79_RS07945 WP_231759819.1 1929324..1930208(-) (pilD) [Microbulbifer elongatus strain DSM 6810]
ATGTTAGAAACCATCAACTCCCACCCAGCGCTGCTAATAAGCAGCGCTTTTATTTTAGGCCTGCTAATCGGCAGCTTCCT
AAACGTAGTCATCCACCGCCTCCCCATCATGATGGAGCGGGAATACCAGCGGGACTTTTACGCTTACTTTGAGAAAACGC
CTTCCCCAGAAGAACAGAAAGCACTGGCGCAGCCCTACAATCTGATCCTCCCCCACTCCCACTGCCCCGGCTGCAAGCAA
GAAATCAAGCCCTGGCAGAACATCCCCATCATCAGCTACCTGCTGCTGCGCGGAAAATGCGGCAATTGTGGTACAGCCAT
TTCAAAACGCTACCCACTGGTGGAGCTGGCCACCGGTATTCTTACCGCGGTGGTGGTATGGCAACTGGGCTTTACCTGGC
AGGCCTTGGCCGGGGTATTTTTTACCTGGGCATTGGTGGCGCTGACCGGGATTGATTTTGACAAACAACTGCTGCCAGAC
AGCGTCACCCTTCCCCTATTGTGGGCGGGGCTGTTGATTAACCTGTGGGGCGTATTTGCCCCACTGCAGGATGCGGTGAT
CGGGGCTATTGCCGGTTACCTGGCCCTGTGGAGCGTGTTTCATATTTTTAAGTTGGTGACCGGCAAGGAAGGCATGGGCG
CGGGGGATTTCAAGATTCTGGCGGCCATTGGGGCCTGGTTTGGCTGGCAGGTATTGCCATTGGTGATTCTGCTTTCTGCC
GCTGTTGGCGCACTTGCCGGTATTACCTGGACACTGATCTCCGGGCGCGACAAAAACCTCCCCATCGCCTTCGGCCCCTA
CCTTGCCGGCGCGGCGTGGATTGCCATGTTGTGGGGTGAGCAGATTATGGGGTGGTATTTTCGTGTTTCCGGGTTGAGCA
GCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

49.135

98.299

0.483
  pilD Acinetobacter baumannii D1279779

49.823

96.259

0.48
  pilD Acinetobacter nosocomialis M2

49.823

96.259

0.48
  pilD Vibrio campbellii strain DS40M4

48.443

98.299

0.476
  pilD Neisseria gonorrhoeae MS11

50.965

88.095

0.449