Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | LQF09_RS14615 | Genome accession | NZ_CP088935 |
| Coordinates | 3188948..3190180 (+) | Length | 410 a.a. |
| NCBI ID | WP_002942986.1 | Uniprot ID | N6Y4L2 |
| Organism | Thauera sp. WB-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3183948..3195180
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQF09_RS14600 (LQF09_14605) | ccsA | 3184930..3185763 (+) | 834 | WP_002924665.1 | cytochrome c biogenesis protein CcsA | - |
| LQF09_RS14605 (LQF09_14610) | - | 3185841..3187133 (+) | 1293 | WP_270068299.1 | CNNM domain-containing protein | - |
| LQF09_RS14610 (LQF09_14615) | pilB | 3187210..3188928 (+) | 1719 | WP_002942984.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LQF09_RS14615 (LQF09_14620) | pilC | 3188948..3190180 (+) | 1233 | WP_002942986.1 | type II secretion system F family protein | Machinery gene |
| LQF09_RS14620 (LQF09_14625) | pilD | 3190181..3191032 (+) | 852 | WP_002942988.1 | A24 family peptidase | Machinery gene |
| LQF09_RS14625 (LQF09_14630) | - | 3191162..3191425 (+) | 264 | WP_002942990.1 | zinc ribbon domain-containing protein | - |
| LQF09_RS14630 (LQF09_14635) | - | 3191466..3192092 (+) | 627 | WP_270068300.1 | DUF502 domain-containing protein | - |
| LQF09_RS14635 (LQF09_14640) | aspS | 3192185..3193984 (+) | 1800 | WP_002924681.1 | aspartate--tRNA ligase | - |
Sequence
Protein
Download Length: 410 a.a. Molecular weight: 44143.84 Da Isoelectric Point: 9.8082
>NTDB_id=634079 LQF09_RS14615 WP_002942986.1 3188948..3190180(+) (pilC) [Thauera sp. WB-2]
MATASRAPRAKGPKEDLYTWEGKDKTGKVVRGEIRANGDAMVQAMLRRQGIQVSKVKKQKMSRGGRISDKDIALFTRQLA
TMMKSGVPLLQAFDIGMKGSANPALSRLLNDIRNDVETGSNLSQAFAKHPQHFDKLFCNLVAAGEQAGILDSLLDRIATY
KEKILAIKSKIKSALFYPAAVVVVAGLVISIMMLFVIPEFKNVFAGFGADLPAPTEMVIAISDAFVAYWYLIFGGLFAAI
AAIAWSYKRSTAMQIALDKAILRFPVIGPIIRKATVARWTRTLSTMFAAGVPLVEALDSVGGASGNHVYLVATREIQAEV
SSGTSLTIAMQNAEVFPTMVVQMVSIGEESGQLDSMLSKVADFFEQEVDDAVAGLSQLLEPLIMVFLGTVIGGLVVAMYL
PIFKIGAVVG
MATASRAPRAKGPKEDLYTWEGKDKTGKVVRGEIRANGDAMVQAMLRRQGIQVSKVKKQKMSRGGRISDKDIALFTRQLA
TMMKSGVPLLQAFDIGMKGSANPALSRLLNDIRNDVETGSNLSQAFAKHPQHFDKLFCNLVAAGEQAGILDSLLDRIATY
KEKILAIKSKIKSALFYPAAVVVVAGLVISIMMLFVIPEFKNVFAGFGADLPAPTEMVIAISDAFVAYWYLIFGGLFAAI
AAIAWSYKRSTAMQIALDKAILRFPVIGPIIRKATVARWTRTLSTMFAAGVPLVEALDSVGGASGNHVYLVATREIQAEV
SSGTSLTIAMQNAEVFPTMVVQMVSIGEESGQLDSMLSKVADFFEQEVDDAVAGLSQLLEPLIMVFLGTVIGGLVVAMYL
PIFKIGAVVG
Nucleotide
Download Length: 1233 bp
>NTDB_id=634079 LQF09_RS14615 WP_002942986.1 3188948..3190180(+) (pilC) [Thauera sp. WB-2]
ATGGCCACAGCAAGCCGGGCACCACGTGCCAAGGGTCCCAAGGAAGACCTGTACACCTGGGAGGGCAAGGACAAGACTGG
CAAGGTCGTTCGCGGCGAGATCCGTGCCAACGGCGACGCCATGGTCCAGGCGATGCTGCGCCGCCAGGGCATCCAGGTCA
GCAAGGTCAAGAAGCAGAAGATGTCTCGTGGTGGCCGCATCAGCGACAAGGACATCGCGCTCTTCACCCGCCAGCTCGCC
ACCATGATGAAGTCCGGCGTACCGCTGCTGCAGGCCTTCGATATCGGCATGAAGGGTTCGGCCAACCCGGCGCTTTCGCG
CCTGCTCAACGATATCCGCAACGACGTCGAGACCGGCTCCAACCTGTCGCAGGCTTTTGCCAAGCACCCTCAGCATTTCG
ACAAGCTGTTCTGCAATCTCGTCGCCGCTGGCGAACAGGCGGGCATCCTCGACTCCCTGCTCGACCGCATCGCGACCTAC
AAGGAAAAGATTCTCGCCATCAAGAGCAAGATCAAGTCGGCGCTGTTCTACCCCGCTGCGGTGGTCGTGGTTGCCGGCCT
GGTGATCTCGATCATGATGCTGTTCGTCATTCCCGAGTTCAAGAACGTGTTCGCCGGTTTCGGTGCAGACCTGCCGGCGC
CAACGGAGATGGTGATCGCGATCTCGGATGCCTTCGTTGCCTACTGGTATCTCATCTTTGGCGGCCTGTTCGCAGCCATT
GCGGCGATCGCCTGGAGCTACAAACGCTCGACGGCCATGCAGATCGCACTGGACAAGGCCATTTTGCGCTTCCCGGTGAT
CGGCCCCATCATCCGCAAGGCAACGGTCGCACGCTGGACGCGCACGCTGTCGACCATGTTCGCCGCGGGGGTGCCGCTTG
TCGAGGCGCTCGATTCGGTGGGCGGCGCCTCGGGCAACCATGTGTATCTGGTTGCGACGCGCGAGATCCAGGCCGAGGTC
AGCAGCGGCACCAGCCTGACCATTGCCATGCAGAACGCCGAGGTCTTCCCAACGATGGTGGTCCAGATGGTGTCGATCGG
CGAAGAGTCAGGCCAGCTCGATTCGATGCTGAGCAAGGTCGCCGACTTTTTCGAACAGGAGGTGGACGACGCCGTCGCCG
GCCTGTCGCAACTGCTCGAACCGTTGATCATGGTATTCCTGGGCACGGTGATCGGCGGCCTGGTGGTCGCGATGTACCTG
CCCATCTTCAAGATCGGCGCGGTGGTCGGCTAG
ATGGCCACAGCAAGCCGGGCACCACGTGCCAAGGGTCCCAAGGAAGACCTGTACACCTGGGAGGGCAAGGACAAGACTGG
CAAGGTCGTTCGCGGCGAGATCCGTGCCAACGGCGACGCCATGGTCCAGGCGATGCTGCGCCGCCAGGGCATCCAGGTCA
GCAAGGTCAAGAAGCAGAAGATGTCTCGTGGTGGCCGCATCAGCGACAAGGACATCGCGCTCTTCACCCGCCAGCTCGCC
ACCATGATGAAGTCCGGCGTACCGCTGCTGCAGGCCTTCGATATCGGCATGAAGGGTTCGGCCAACCCGGCGCTTTCGCG
CCTGCTCAACGATATCCGCAACGACGTCGAGACCGGCTCCAACCTGTCGCAGGCTTTTGCCAAGCACCCTCAGCATTTCG
ACAAGCTGTTCTGCAATCTCGTCGCCGCTGGCGAACAGGCGGGCATCCTCGACTCCCTGCTCGACCGCATCGCGACCTAC
AAGGAAAAGATTCTCGCCATCAAGAGCAAGATCAAGTCGGCGCTGTTCTACCCCGCTGCGGTGGTCGTGGTTGCCGGCCT
GGTGATCTCGATCATGATGCTGTTCGTCATTCCCGAGTTCAAGAACGTGTTCGCCGGTTTCGGTGCAGACCTGCCGGCGC
CAACGGAGATGGTGATCGCGATCTCGGATGCCTTCGTTGCCTACTGGTATCTCATCTTTGGCGGCCTGTTCGCAGCCATT
GCGGCGATCGCCTGGAGCTACAAACGCTCGACGGCCATGCAGATCGCACTGGACAAGGCCATTTTGCGCTTCCCGGTGAT
CGGCCCCATCATCCGCAAGGCAACGGTCGCACGCTGGACGCGCACGCTGTCGACCATGTTCGCCGCGGGGGTGCCGCTTG
TCGAGGCGCTCGATTCGGTGGGCGGCGCCTCGGGCAACCATGTGTATCTGGTTGCGACGCGCGAGATCCAGGCCGAGGTC
AGCAGCGGCACCAGCCTGACCATTGCCATGCAGAACGCCGAGGTCTTCCCAACGATGGTGGTCCAGATGGTGTCGATCGG
CGAAGAGTCAGGCCAGCTCGATTCGATGCTGAGCAAGGTCGCCGACTTTTTCGAACAGGAGGTGGACGACGCCGTCGCCG
GCCTGTCGCAACTGCTCGAACCGTTGATCATGGTATTCCTGGGCACGGTGATCGGCGGCCTGGTGGTCGCGATGTACCTG
CCCATCTTCAAGATCGGCGCGGTGGTCGGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
51.99 |
98.049 |
0.51 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.273 |
96.585 |
0.505 |
| pilG | Neisseria gonorrhoeae MS11 |
49.118 |
96.829 |
0.476 |
| pilC | Acinetobacter baylyi ADP1 |
48.744 |
97.073 |
0.473 |
| pilG | Neisseria meningitidis 44/76-A |
48.866 |
96.829 |
0.473 |
| pilC | Acinetobacter baumannii D1279779 |
47.859 |
96.829 |
0.463 |
| pilC | Vibrio cholerae strain A1552 |
43.325 |
96.829 |
0.42 |
| pilC | Vibrio campbellii strain DS40M4 |
41.975 |
98.78 |
0.415 |
| pilC | Thermus thermophilus HB27 |
38.653 |
97.805 |
0.378 |