Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LQF09_RS14620 Genome accession   NZ_CP088935
Coordinates   3190181..3191032 (+) Length   283 a.a.
NCBI ID   WP_002942988.1    Uniprot ID   N6YAN4
Organism   Thauera sp. WB-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3185181..3196032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF09_RS14605 (LQF09_14610) - 3185841..3187133 (+) 1293 WP_270068299.1 CNNM domain-containing protein -
  LQF09_RS14610 (LQF09_14615) pilB 3187210..3188928 (+) 1719 WP_002942984.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LQF09_RS14615 (LQF09_14620) pilC 3188948..3190180 (+) 1233 WP_002942986.1 type II secretion system F family protein Machinery gene
  LQF09_RS14620 (LQF09_14625) pilD 3190181..3191032 (+) 852 WP_002942988.1 A24 family peptidase Machinery gene
  LQF09_RS14625 (LQF09_14630) - 3191162..3191425 (+) 264 WP_002942990.1 zinc ribbon domain-containing protein -
  LQF09_RS14630 (LQF09_14635) - 3191466..3192092 (+) 627 WP_270068300.1 DUF502 domain-containing protein -
  LQF09_RS14635 (LQF09_14640) aspS 3192185..3193984 (+) 1800 WP_002924681.1 aspartate--tRNA ligase -
  LQF09_RS14640 (LQF09_14645) - 3194135..3195781 (+) 1647 WP_270068301.1 tetratricopeptide repeat-containing response regulator -

Sequence

Protein


Download         Length: 283 a.a.        Molecular weight: 30616.17 Da        Isoelectric Point: 7.1355

>NTDB_id=634080 LQF09_RS14620 WP_002942988.1 3190181..3191032(+) (pilD) [Thauera sp. WB-2]
MEALLQDPLVFAGLAALLGLFVGSFLNVVIHRLPKMMERDWHAQAAELRGEAATEGERFNLATPRSRCPHCGHQISALEN
IPVVSYVLLRGRCRHCGAGISKRYPIVEACTALLSGYAAWHFGFGLAALGALLFVWAMVALTFIDLDTQLLPDDITLPLL
WLGLAFNLAGTYTELADAVVGAMAGYLVLWSVFWLFKLATGKEGMGYGDFKLLGAIGAWLGWQVLPLTILLSSLVGAAVG
IVLILFARHGRNVPIPFGPYLAAAGLIALFWGERLTSHYLGLL

Nucleotide


Download         Length: 852 bp        

>NTDB_id=634080 LQF09_RS14620 WP_002942988.1 3190181..3191032(+) (pilD) [Thauera sp. WB-2]
ATGGAGGCCCTGCTGCAAGACCCGCTCGTATTCGCAGGCCTCGCTGCACTGCTGGGCCTGTTCGTGGGCAGCTTCCTCAA
CGTCGTCATCCACCGCCTGCCAAAGATGATGGAGCGCGACTGGCATGCCCAGGCGGCGGAATTACGCGGGGAGGCGGCCA
CTGAAGGCGAGCGCTTCAACCTCGCGACGCCGCGCTCGCGCTGCCCTCATTGCGGCCACCAGATCAGCGCACTCGAGAAC
ATCCCCGTGGTCAGCTACGTCCTGCTGCGTGGCCGCTGCCGACACTGCGGCGCCGGCATCAGCAAGCGCTACCCCATCGT
GGAGGCCTGTACGGCGCTGCTGTCGGGCTATGCGGCATGGCACTTCGGATTCGGACTCGCCGCGCTGGGCGCCCTGCTCT
TCGTCTGGGCAATGGTCGCGCTCACCTTCATCGACCTCGACACCCAGCTTCTTCCCGACGACATCACACTGCCCCTGCTC
TGGCTCGGCCTGGCCTTCAACCTCGCCGGCACCTACACCGAGCTTGCCGATGCCGTGGTGGGCGCCATGGCGGGCTACCT
GGTGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTCGCCACGGGCAAGGAGGGCATGGGCTATGGCGACTTCAAGCTGCTCG
GCGCGATCGGTGCCTGGCTCGGCTGGCAGGTACTGCCTCTGACCATCCTGCTCTCCTCCCTGGTCGGCGCGGCGGTAGGT
ATCGTGCTCATCCTGTTCGCCCGCCACGGCCGCAACGTCCCCATCCCTTTCGGCCCCTACCTGGCAGCCGCAGGGCTGAT
CGCCCTGTTCTGGGGCGAACGGCTCACCAGCCACTATCTGGGTCTGCTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-122)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N6YAN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.77

100

0.548
  pilD Vibrio campbellii strain DS40M4

53.004

100

0.53
  pilD Acinetobacter baumannii D1279779

50.186

95.053

0.477
  pilD Acinetobacter nosocomialis M2

49.071

95.053

0.466
  pilD Neisseria gonorrhoeae MS11

51.172

90.459

0.463