Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PALA4_RS00125 Genome accession   NZ_CP104866
Coordinates   26750..27838 (+) Length   362 a.a.
NCBI ID   WP_023108719.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 21750..32838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA4_RS00105 (PALA4_00021) rsmB 22645..23949 (-) 1305 WP_003111376.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PALA4_RS00110 (PALA4_00022) fmt 23946..24890 (-) 945 WP_009877318.1 methionyl-tRNA formyltransferase -
  PALA4_RS00115 (PALA4_00023) def 24945..25451 (-) 507 WP_003107059.1 peptide deformylase -
  PALA4_RS00120 (PALA4_00024) tsaP 25590..26615 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  PALA4_RS00125 (PALA4_00025) dprA 26750..27838 (+) 1089 WP_023108719.1 DNA-processing protein DprA Machinery gene
  PALA4_RS00130 (PALA4_00026) - 27879..28436 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  PALA4_RS00135 (PALA4_00027) - 28446..29423 (-) 978 WP_003111202.1 NADPH:quinone reductase -
  PALA4_RS00140 (PALA4_00028) hemF 29614..30531 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  PALA4_RS00145 (PALA4_00029) aroE 30589..31413 (+) 825 WP_003111201.1 shikimate dehydrogenase -
  PALA4_RS00150 (PALA4_00030) - 31524..32510 (+) 987 WP_003111200.1 phospholipase C -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 37663.13 Da        Isoelectric Point: 7.0742

>NTDB_id=633955 PALA4_RS00125 WP_023108719.1 26750..27838(+) (dprA) [Pseudomonas aeruginosa strain PALA4]
MKNHSPAELEARLRLHGLPELGSMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAAP
YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=633955 PALA4_RS00125 WP_023108719.1 26750..27838(+) (dprA) [Pseudomonas aeruginosa strain PALA4]
ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGATCCATGCGCTTCCT
GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGGCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGGCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAGCCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCC
TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGATGTGCTGGCGACGCTCAGCGAACTGGAACTCGA
CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

43.316

100

0.448
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

43.316

100

0.448
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.445
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.972

98.066

0.412
  dprA Legionella pneumophila strain ERS1305867

49.655

80.11

0.398
  dprA Acinetobacter baumannii D1279779

37.845

100

0.378
  dprA Acinetobacter baumannii strain A118

37.569

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

44.554

83.702

0.373
  dprA Neisseria meningitidis MC58

46.048

80.387

0.37
  dprA Neisseria meningitidis strain C311

46.048

80.387

0.37
  dprA Glaesserella parasuis strain SC1401

46.853

79.006

0.37
  dprA Neisseria gonorrhoeae MS11

44.224

83.702

0.37