Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LQZ07_RS05165 Genome accession   NZ_CP088080
Coordinates   1101354..1102604 (-) Length   416 a.a.
NCBI ID   WP_152780582.1    Uniprot ID   -
Organism   Agarivorans sp. B2Z047     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1096354..1107604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQZ07_RS05140 (LQZ07_05140) mutT 1098465..1098869 (+) 405 WP_249483546.1 8-oxo-dGTP diphosphatase MutT -
  LQZ07_RS05145 (LQZ07_05145) yacG 1098872..1099072 (-) 201 WP_016400794.1 DNA gyrase inhibitor YacG -
  LQZ07_RS05150 (LQZ07_05150) zapD 1099072..1099812 (-) 741 WP_152780588.1 cell division protein ZapD -
  LQZ07_RS05155 (LQZ07_05155) coaE 1099871..1100473 (-) 603 WP_249483548.1 dephospho-CoA kinase -
  LQZ07_RS05160 (LQZ07_05160) pilD 1100470..1101351 (-) 882 WP_152780584.1 A24 family peptidase Machinery gene
  LQZ07_RS05165 (LQZ07_05165) pilC 1101354..1102604 (-) 1251 WP_152780582.1 type II secretion system F family protein Machinery gene
  LQZ07_RS05170 (LQZ07_05170) pilB 1102692..1104401 (-) 1710 WP_152780580.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LQZ07_RS05175 (LQZ07_05175) - 1104408..1104896 (-) 489 WP_152780579.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LQZ07_RS05180 (LQZ07_05180) nadC 1105150..1105989 (-) 840 WP_152780577.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LQZ07_RS05185 (LQZ07_05185) ampD 1106163..1106699 (+) 537 WP_152780575.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45572.45 Da        Isoelectric Point: 9.3635

>NTDB_id=632571 LQZ07_RS05165 WP_152780582.1 1101354..1102604(-) (pilC) [Agarivorans sp. B2Z047]
MATASTTSKRKIEVKKINAYTWSGVNRKGAKVSGEYQAETISQVKAELKRQGITVTKIKKKTESFLSKMGNKISPMDIAV
VSRQIATMLQAGVPLVQSFNIISKSVEKPAMRELIAEIAAEVESGTALSETLRKHPLYFDQLYCDLIEAGEQSGALETIY
DRVAIYKEKAEALKSKIKKAMFYPVSVIIVAIIVTTILLLFVIPQFEEIFAGFGAELPAFTQFVIGISRFLQDYWPYIFG
GIFALGYGYVQAFRRSQAVKDATDRFILRIPVINPILHKAAMARFARTLSTTFAAGIPLIDALRSASGASGNVVYRNAVD
AIRIEVTGGMQMNVAMRTVDLFPDMVTQMVMIGEESGSLDSMLDKVANIYEQQVDDAVDGLTSLIEPLIMAVLGVLVGGM
VIAMYLPIFKLGSVVS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=632571 LQZ07_RS05165 WP_152780582.1 1101354..1102604(-) (pilC) [Agarivorans sp. B2Z047]
ATGGCTACCGCAAGTACTACCAGCAAACGAAAAATTGAAGTTAAAAAAATCAATGCTTACACTTGGAGTGGAGTTAACCG
CAAAGGCGCTAAAGTTAGCGGCGAATATCAAGCGGAAACCATTAGCCAAGTTAAAGCAGAACTAAAACGCCAGGGCATTA
CTGTTACCAAAATTAAAAAGAAAACCGAAAGTTTTCTTAGCAAGATGGGTAATAAGATTAGCCCCATGGATATCGCCGTG
GTATCGCGGCAAATAGCTACCATGCTGCAAGCAGGCGTGCCTTTGGTTCAAAGCTTCAACATCATATCCAAAAGTGTAGA
AAAGCCAGCAATGCGTGAGTTGATCGCAGAAATTGCCGCGGAAGTTGAATCTGGTACAGCCCTTTCGGAAACTCTGCGCA
AACATCCCTTATATTTTGACCAGCTCTACTGCGATTTAATTGAAGCGGGTGAGCAAAGTGGTGCTTTAGAAACCATTTAT
GATCGCGTAGCAATTTATAAAGAGAAAGCCGAAGCACTTAAATCAAAAATTAAGAAGGCGATGTTTTACCCCGTTTCAGT
GATCATTGTCGCGATTATTGTTACCACTATTCTACTGCTATTTGTTATTCCCCAGTTTGAAGAGATTTTTGCCGGCTTTG
GAGCGGAATTACCTGCCTTCACCCAGTTTGTGATTGGCATCTCCCGCTTCTTACAGGATTATTGGCCCTATATTTTTGGT
GGCATATTCGCGCTTGGTTATGGCTATGTGCAAGCCTTTCGGCGCTCCCAAGCAGTAAAAGACGCTACCGACCGGTTTAT
ACTTCGAATTCCTGTGATCAACCCTATTTTGCATAAAGCAGCAATGGCACGTTTTGCTCGCACCTTATCAACCACCTTTG
CAGCCGGTATTCCGTTAATTGATGCACTGCGCTCTGCCTCTGGTGCATCAGGTAACGTAGTCTATCGAAATGCCGTAGAC
GCGATAAGAATTGAGGTTACTGGCGGTATGCAAATGAACGTCGCCATGCGCACTGTGGATTTATTTCCCGACATGGTGAC
GCAAATGGTGATGATTGGTGAGGAGTCTGGTTCACTTGATAGCATGTTAGATAAGGTGGCCAACATTTATGAGCAGCAAG
TTGATGATGCTGTAGACGGCCTAACCAGCTTAATTGAGCCACTAATTATGGCTGTGCTCGGTGTCCTAGTTGGTGGTATG
GTGATCGCCATGTACTTACCTATCTTTAAACTCGGATCAGTTGTTAGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(82-204)

Type II secretion system (T2SS), protein F (T2SSF)

(285-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.5

96.154

0.543
  pilC Acinetobacter baylyi ADP1

54.66

95.433

0.522
  pilC Acinetobacter baumannii D1279779

54.156

95.433

0.517
  pilC Legionella pneumophila strain ERS1305867

52.02

95.192

0.495
  pilC Vibrio campbellii strain DS40M4

44.75

96.154

0.43
  pilC Vibrio cholerae strain A1552

44.862

95.913

0.43
  pilG Neisseria gonorrhoeae MS11

43.21

97.356

0.421
  pilG Neisseria meningitidis 44/76-A

43.21

97.356

0.421
  pilC Thermus thermophilus HB27

37.469

96.875

0.363