Detailed information NTG0632570

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LQZ07_RS05160
• Genome accession: NZ_CP088080
• Coordinates: 1100470..1101351 (-)
• Length: 293 a.a.
• NCBI ID: WP_152780584.1
• Uniprot ID: A0A7C9JXQ7
• Organism: Agarivorans sp. B2Z047
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1095470..1106351

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQZ07_RS05135 (LQZ07_05135)	secA	1095682..1098399 (+)	2718	WP_016400792.1	preprotein translocase subunit SecA	-
LQZ07_RS05140 (LQZ07_05140)	mutT	1098465..1098869 (+)	405	WP_249483546.1	8-oxo-dGTP diphosphatase MutT	-
LQZ07_RS05145 (LQZ07_05145)	yacG	1098872..1099072 (-)	201	WP_016400794.1	DNA gyrase inhibitor YacG	-
LQZ07_RS05150 (LQZ07_05150)	zapD	1099072..1099812 (-)	741	WP_152780588.1	cell division protein ZapD	-
LQZ07_RS05155 (LQZ07_05155)	coaE	1099871..1100473 (-)	603	WP_249483548.1	dephospho-CoA kinase	-
LQZ07_RS05160 (LQZ07_05160)	pilD	1100470..1101351 (-)	882	WP_152780584.1	A24 family peptidase	Machinery gene
LQZ07_RS05165 (LQZ07_05165)	pilC	1101354..1102604 (-)	1251	WP_152780582.1	type II secretion system F family protein	Machinery gene
LQZ07_RS05170 (LQZ07_05170)	pilB	1102692..1104401 (-)	1710	WP_152780580.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LQZ07_RS05175 (LQZ07_05175)	-	1104408..1104896 (-)	489	WP_152780579.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LQZ07_RS05180 (LQZ07_05180)	nadC	1105150..1105989 (-)	840	WP_152780577.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32616.70 Da
• Isoelectric Point: 6.2066

>NTDB_id=632570 LQZ07_RS05160 WP_152780584.1 1100470..1101351(-) (pilD) [Agarivorans sp. B2Z047]
MLSFIELYPATALGFCLLIALCIGSFLNVVIHRLPIMLERQWKNECRSFLSEELKSEQPSEQEVYNLMLPRSACPKCKNL
ITAWQNIPVISWLALRGKCANCSNPISIRYPLVELASAGLTLACWWQFGLTLPFVFASLFCIILLCLTLIDLDTMYLPDQ
LTLPTLWLGFLINLDSGFVSLHDAVLGAAIGYSFLWSLFWLFKLLTGKEGMGYGDFKLLAMIGAWFGWQALPLTILLSSF
AGALIGISLIVFGKNQQGQAIPFGPYLALGGACYLFFGEAIHAWYFSYLGFAS

Nucleotide

• Length: 882 bp

>NTDB_id=632570 LQZ07_RS05160 WP_152780584.1 1100470..1101351(-) (pilD) [Agarivorans sp. B2Z047]
ATGCTTAGTTTTATTGAACTCTACCCAGCCACTGCGCTGGGTTTCTGCCTTTTAATCGCCCTATGCATAGGCTCCTTTCT
CAATGTAGTGATTCATCGCTTGCCCATCATGTTAGAGCGACAATGGAAAAATGAATGCCGCAGTTTCTTGTCTGAAGAAT
TGAAGTCAGAGCAACCCTCAGAGCAAGAAGTATATAACCTGATGCTGCCGCGCTCAGCATGTCCCAAGTGCAAAAACTTG
ATTACAGCCTGGCAAAATATTCCTGTAATTAGCTGGCTAGCCCTTCGTGGCAAATGCGCTAATTGCAGCAACCCTATTAG
TATTCGCTACCCTTTAGTTGAGCTAGCATCTGCTGGCTTAACCTTGGCTTGTTGGTGGCAATTTGGCCTCACTTTACCTT
TTGTATTTGCAAGCTTGTTTTGCATTATATTGTTGTGTCTAACACTTATCGATTTAGACACTATGTATTTACCAGATCAG
CTTACTTTACCCACCTTGTGGCTAGGCTTTCTGATAAATTTAGATTCAGGTTTCGTTAGCCTACATGACGCCGTATTGGG
TGCAGCTATTGGTTATAGCTTTTTGTGGAGCCTGTTTTGGCTATTTAAGTTATTAACCGGAAAAGAAGGCATGGGCTATG
GTGACTTCAAACTGCTAGCAATGATAGGCGCTTGGTTTGGCTGGCAAGCCCTGCCATTAACAATTTTGCTTTCATCTTTT
GCAGGTGCGCTTATAGGCATTAGCCTGATAGTATTTGGAAAAAACCAACAAGGGCAAGCCATTCCTTTTGGACCGTACCT
AGCTTTAGGTGGTGCTTGCTACTTGTTTTTTGGTGAAGCCATTCATGCTTGGTATTTCTCATACCTAGGTTTTGCATCGT
GA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

3D structure

• AlphaFold DB: A0A7C9JXQ7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	49.653	98.294	0.488
pilD	Vibrio cholerae strain A1552	51.103	92.833	0.474
pilD	Acinetobacter baumannii D1279779	48.148	92.15	0.444
pilD	Acinetobacter nosocomialis M2	47.778	92.15	0.44
pilD	Neisseria gonorrhoeae MS11	48.462	88.737	0.43