Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LQF05_RS16045 Genome accession   NZ_CP088004
Coordinates   3449836..3451053 (-) Length   405 a.a.
NCBI ID   WP_265661083.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SB-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3444836..3456053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQF05_RS16010 (LQF05_15985) rpsI 3444982..3445374 (-) 393 WP_013981948.1 30S ribosomal protein S9 -
  LQF05_RS16015 (LQF05_15990) rplM 3445390..3445818 (-) 429 WP_003287302.1 50S ribosomal protein L13 -
  LQF05_RS16020 (LQF05_15995) - 3446239..3447279 (+) 1041 WP_270066805.1 NADP(H)-dependent aldo-keto reductase -
  LQF05_RS16025 (LQF05_16000) - 3447337..3448017 (+) 681 WP_270066806.1 energy-coupling factor ABC transporter permease -
  LQF05_RS16030 (LQF05_16005) yacG 3448030..3448227 (-) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  LQF05_RS16035 (LQF05_16010) coaE 3448224..3448832 (-) 609 WP_080940987.1 dephospho-CoA kinase -
  LQF05_RS16040 (LQF05_16015) pilD 3448964..3449833 (-) 870 WP_270066807.1 prepilin peptidase Machinery gene
  LQF05_RS16045 (LQF05_16020) pilC 3449836..3451053 (-) 1218 WP_265661083.1 type II secretion system F family protein Machinery gene
  LQF05_RS16050 (LQF05_16025) pilB 3451056..3452759 (-) 1704 WP_270066808.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LQF05_RS16055 (LQF05_16035) - 3453069..3453515 (+) 447 WP_270066809.1 pilin -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44150.88 Da        Isoelectric Point: 9.8747

>NTDB_id=632303 LQF05_RS16045 WP_265661083.1 3449836..3451053(-) (pilC) [Stutzerimonas stutzeri strain SB-1]
MAQKAIRTSVFSWEGTDRKGSKVKGELSGASPALVKAQLRKQGINPQKVRKKSVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAVIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFIVLAGLIVGAFAFK
EAHKRSEKFRNWFDRLLLKVPVVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRSATMKVKNDVSTGM
QLNFSMRTTGTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDSLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=632303 LQF05_RS16045 WP_265661083.1 3449836..3451053(-) (pilC) [Stutzerimonas stutzeri strain SB-1]
ATGGCGCAGAAAGCGATCAGAACCAGTGTGTTCAGCTGGGAGGGAACCGACCGCAAGGGCAGCAAGGTCAAGGGTGAGCT
TAGTGGTGCGAGCCCGGCGCTGGTGAAGGCGCAATTGCGCAAGCAAGGGATCAATCCACAGAAAGTGCGCAAGAAGTCCG
TATCTCTGTTTGGAGCGGGCAAGAAAATTAAACCCATGGATATCGCGCTGTTCACCCGACAGATGGCGACGATGATGAAA
GCCGGTGTGCCGCTGCTGCAATCCTTCGATATCATCGGTGAGGGTTTCGACAATCCGAACATGCGCAAGCTGGTGGATGA
CCTGAAGCAGGAAGTTGCGGCAGGTAACAGTTTCGCGACGGCTTTGCGCAAGAAGCCACAATACTTCGATGATCTTTATT
GCAACTTGGTCGATTCCGGTGAGCAATCCGGTGCCTTGGAAACCTTGCTCGATCGCGTGGCGACTTACAAGGAAAAGACT
GAGGCATTGAAGGCCAAGATCAAGAAGGCGATGAACTATCCCATTGCGGTAGTCTTGGTGGCGGTCATCGTGTCGGCCAT
TCTGTTGATCAAGGTGGTGCCACAGTTCCAAGAAGTATTCGCCAACTTCGGGGCCGAGCTTCCAGCTTTTACCTTGATGG
TCATTGGATTGTCGGAAGCGCTGCAGGAGTGGTGGTTCATTGTTCTGGCGGGGTTGATCGTGGGGGCGTTTGCTTTCAAG
GAGGCACACAAGCGCTCCGAAAAATTTCGCAACTGGTTCGATCGTTTGCTGCTAAAGGTACCAGTTGTTGGTGACATTCT
TTACAAGTCATCTGTCGCCCGCTTTGCCCGCACTCTTTCGACGACTTTTGCTGCGGGCGTGCCGCTGGTGGATGCGCTGG
ATTCGGTGGCTGGGGCTACAGGCAATGTGGTCTTTCGAAGTGCGACGATGAAAGTCAAGAATGATGTGTCCACCGGCATG
CAGCTTAACTTCTCCATGCGCACCACAGGCACGTTCCCTACGATGGCAGTGCAGATGACAGCAATCGGTGAAGAGTCTGG
TTCGCTTGATGAGATGCTGGCTAAGGTTGCGACTTTCTACGAGGACGAAGTCGATAACATGGTAGATAGCCTGACTAGCC
TGATGGAACCAATGATCATGGCCGTGCTCGGGGTTCTGGTGGGCGGCTTGATCATCGCTATGTACCTTCCGATTTTCCAG
CTAGGTGCTGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

90.864

100

0.909
  pilC Acinetobacter baylyi ADP1

60.539

100

0.61
  pilC Acinetobacter baumannii D1279779

60

100

0.6
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilG Neisseria gonorrhoeae MS11

44.949

97.778

0.44
  pilG Neisseria meningitidis 44/76-A

44.949

97.778

0.44
  pilC Vibrio cholerae strain A1552

43.182

97.778

0.422
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4
  pilC Thermus thermophilus HB27

36.591

98.519

0.36