Detailed information NTG0632302

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LQF05_RS16040
• Genome accession: NZ_CP088004
• Coordinates: 3448964..3449833 (-)
• Length: 289 a.a.
• NCBI ID: WP_270066807.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain SB-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3443964..3454833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LQF05_RS16005 (LQF05_15980)	petA	3444134..3444727 (-)	594	WP_011912250.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
LQF05_RS16010 (LQF05_15985)	rpsI	3444982..3445374 (-)	393	WP_013981948.1	30S ribosomal protein S9	-
LQF05_RS16015 (LQF05_15990)	rplM	3445390..3445818 (-)	429	WP_003287302.1	50S ribosomal protein L13	-
LQF05_RS16020 (LQF05_15995)	-	3446239..3447279 (+)	1041	WP_270066805.1	NADP(H)-dependent aldo-keto reductase	-
LQF05_RS16025 (LQF05_16000)	-	3447337..3448017 (+)	681	WP_270066806.1	energy-coupling factor ABC transporter permease	-
LQF05_RS16030 (LQF05_16005)	yacG	3448030..3448227 (-)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
LQF05_RS16035 (LQF05_16010)	coaE	3448224..3448832 (-)	609	WP_080940987.1	dephospho-CoA kinase	-
LQF05_RS16040 (LQF05_16015)	pilD	3448964..3449833 (-)	870	WP_270066807.1	prepilin peptidase	Machinery gene
LQF05_RS16045 (LQF05_16020)	pilC	3449836..3451053 (-)	1218	WP_265661083.1	type II secretion system F family protein	Machinery gene
LQF05_RS16050 (LQF05_16025)	pilB	3451056..3452759 (-)	1704	WP_270066808.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LQF05_RS16055 (LQF05_16035)	-	3453069..3453515 (+)	447	WP_270066809.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32155.08 Da
• Isoelectric Point: 7.2178

>NTDB_id=632302 LQF05_RS16040 WP_270066807.1 3448964..3449833(-) (pilD) [Stutzerimonas stutzeri strain SB-1]
MSLIDFLASQVLAFVLSAAVLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLEYPPEPIGERFNLLVPSSRCPHCGHRIR
AWENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLIANNFALFASLEDALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGERITESYLQFARF

Nucleotide

• Length: 870 bp

>NTDB_id=632302 LQF05_RS16040 WP_270066807.1 3448964..3449833(-) (pilD) [Stutzerimonas stutzeri strain SB-1]
ATGAGTTTGATTGACTTCTTGGCCAGCCAAGTGCTGGCCTTTGTTTTGTCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAG
CTTTCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAGTATTTGGAGT
ATCCGCCCGAGCCAATTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGT
GCCTGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCG
ATATCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGG
CGATGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTG
CTGCCGCTCTTGTGGTTAGGGTTGATTGCCAACAACTTTGCTTTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGAT
AGCCGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGGTCACAGGCAAAGAGGGGATGGGCTACGGCGATT
TCAAGCTGCTAGCGATGCTTGGTGCCTGGGGCGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCTTCGGTGGTCGGC
GCCGTTCTTGGCAGTATTTTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGAT
AGCGGGGTGGATTGCGTTGCTTTGGGGCGAACGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.455	95.156	0.547
pilD	Vibrio campbellii strain DS40M4	57.664	94.81	0.547
pilD	Acinetobacter baumannii D1279779	50.175	98.616	0.495
pilD	Acinetobacter nosocomialis M2	50.175	98.616	0.495
pilD	Neisseria gonorrhoeae MS11	54.902	88.235	0.484