Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LPS07_RS17130 Genome accession   NZ_CP087716
Coordinates   3558135..3559361 (+) Length   408 a.a.
NCBI ID   WP_002114869.1    Uniprot ID   A0A009NCN6
Organism   Acinetobacter pittii strain AP2044     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3553135..3564361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPS07_RS17095 (LPS07_17095) rimP 3553807..3554331 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  LPS07_RS17115 (LPS07_17115) secG 3554969..3555298 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  LPS07_RS17120 (LPS07_17120) tpiA 3555311..3556105 (-) 795 WP_032063691.1 triose-phosphate isomerase -
  LPS07_RS17125 (LPS07_17125) pilB 3556396..3558108 (+) 1713 WP_230445083.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPS07_RS17130 (LPS07_17130) pilC 3558135..3559361 (+) 1227 WP_002114869.1 type II secretion system F family protein Machinery gene
  LPS07_RS17135 (LPS07_17135) pilD 3559361..3560221 (+) 861 WP_032070754.1 prepilin peptidase Machinery gene
  LPS07_RS17140 (LPS07_17140) coaE 3560223..3560819 (+) 597 WP_005065869.1 dephospho-CoA kinase -
  LPS07_RS17145 (LPS07_17145) - 3560816..3561730 (-) 915 WP_032063689.1 DMT family transporter -
  LPS07_RS17150 (LPS07_17150) rlmB 3561766..3562515 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LPS07_RS17155 (LPS07_17155) - 3562618..3562944 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  LPS07_RS17160 (LPS07_17160) - 3563021..3564331 (-) 1311 WP_032063688.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45041.48 Da        Isoelectric Point: 9.8207

>NTDB_id=631224 LPS07_RS17130 WP_002114869.1 3558135..3559361(+) (pilC) [Acinetobacter pittii strain AP2044]
MTVKKAQMMPTFAYEGVDRKGIKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=631224 LPS07_RS17130 WP_002114869.1 3558135..3559361(+) (pilC) [Acinetobacter pittii strain AP2044]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCATAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGCGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACATTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGATCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCTTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACTGGTCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCGCTAGACAGCATGCTCGATAAAGTTGCTACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NCN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365