Detailed information NTG0631225

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LPS07_RS17135
• Genome accession: NZ_CP087716
• Coordinates: 3559361..3560221 (+)
• Length: 286 a.a.
• NCBI ID: WP_032070754.1
• Uniprot ID: A0AAE9M8Y4
• Organism: Acinetobacter pittii strain AP2044
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3554361..3565221

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LPS07_RS17115 (LPS07_17115)	secG	3554969..3555298 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
LPS07_RS17120 (LPS07_17120)	tpiA	3555311..3556105 (-)	795	WP_032063691.1	triose-phosphate isomerase	-
LPS07_RS17125 (LPS07_17125)	pilB	3556396..3558108 (+)	1713	WP_230445083.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LPS07_RS17130 (LPS07_17130)	pilC	3558135..3559361 (+)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
LPS07_RS17135 (LPS07_17135)	pilD	3559361..3560221 (+)	861	WP_032070754.1	prepilin peptidase	Machinery gene
LPS07_RS17140 (LPS07_17140)	coaE	3560223..3560819 (+)	597	WP_005065869.1	dephospho-CoA kinase	-
LPS07_RS17145 (LPS07_17145)	-	3560816..3561730 (-)	915	WP_032063689.1	DMT family transporter	-
LPS07_RS17150 (LPS07_17150)	rlmB	3561766..3562515 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
LPS07_RS17155 (LPS07_17155)	-	3562618..3562944 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
LPS07_RS17160 (LPS07_17160)	-	3563021..3564331 (-)	1311	WP_032063688.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32128.61 Da
• Isoelectric Point: 6.4261

>NTDB_id=631225 LPS07_RS17135 WP_032070754.1 3559361..3560221(+) (pilD) [Acinetobacter pittii strain AP2044]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQILLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGDCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=631225 LPS07_RS17135 WP_032070754.1 3559361..3560221(+) (pilD) [Acinetobacter pittii strain AP2044]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATATTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCGATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCTATTTGGGG
ATATTTAATCGGTTTTTTATGCCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437