Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IUZ65_RS04535 Genome accession   NZ_CP087590
Coordinates   937544..937789 (+) Length   81 a.a.
NCBI ID   WP_195704992.1    Uniprot ID   -
Organism   Vibrio sp. VB16     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 932544..942789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUZ65_RS04525 (IUZ65_004525) - 935012..935284 (+) 273 WP_195702609.1 HU family DNA-binding protein -
  IUZ65_RS04530 (IUZ65_004530) ppiD 935437..937302 (+) 1866 WP_195702610.1 peptidylprolyl isomerase -
  IUZ65_RS04535 (IUZ65_004535) comEA 937544..937789 (+) 246 WP_195704992.1 ComEA family DNA-binding protein Machinery gene
  IUZ65_RS04540 (IUZ65_004540) rrtA 937880..938440 (-) 561 WP_195702611.1 rhombosortase -
  IUZ65_RS04545 (IUZ65_004545) - 938444..939073 (+) 630 WP_195702612.1 tRNA-uridine aminocarboxypropyltransferase -
  IUZ65_RS04550 (IUZ65_004550) - 939081..940406 (-) 1326 WP_195702613.1 anti-phage deoxyguanosine triphosphatase -
  IUZ65_RS04555 (IUZ65_004555) xylA 940605..941924 (-) 1320 WP_195702614.1 xylose isomerase -

Sequence

Protein


Download         Length: 81 a.a.        Molecular weight: 8963.32 Da        Isoelectric Point: 4.7906

>NTDB_id=630223 IUZ65_RS04535 WP_195704992.1 937544..937789(+) (comEA) [Vibrio sp. VB16]
MTEHVLPVAADKYEGIEITVNINTGTIEELSTLLLGIGEKKAQLIIDYRDEHGPFLSAEDLMQVKGIGPSTIEKNSKRIR
L

Nucleotide


Download         Length: 246 bp        

>NTDB_id=630223 IUZ65_RS04535 WP_195704992.1 937544..937789(+) (comEA) [Vibrio sp. VB16]
ATGACAGAGCATGTATTACCTGTGGCAGCCGATAAATACGAAGGTATCGAAATAACGGTCAACATCAATACTGGCACCAT
TGAAGAGCTGTCTACACTTTTACTCGGAATTGGAGAAAAAAAAGCACAGCTGATTATTGATTACCGGGATGAGCATGGAC
CATTTCTATCGGCGGAAGATTTGATGCAAGTGAAAGGGATTGGACCTTCTACGATAGAGAAAAACAGCAAGAGAATAAGG
TTGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(19-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

70.833

88.889

0.63
  comEA Vibrio campbellii strain DS40M4

66.667

88.889

0.593
  comEA Vibrio cholerae C6706

60.274

90.123

0.543
  comEA Vibrio cholerae strain A1552

60.274

90.123

0.543
  comEA Acinetobacter baylyi ADP1

52.308

80.247

0.42
  comE1/comEA Haemophilus influenzae Rd KW20

53.333

74.074

0.395
  comEA/comE1 Glaesserella parasuis strain SC1401

55.357

69.136

0.383
  comA Synechocystis sp. PCC 6803

55.556

66.667

0.37
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.571

69.136

0.37
  comEA Lactococcus lactis subsp. cremoris KW2

54.545

67.901

0.37