Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   N597_RS00330 Genome accession   NC_022582
Coordinates   62070..62465 (+) Length   131 a.a.
NCBI ID   WP_023022090.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 57070..67465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS10530 (N597_00315) - 57466..57621 (+) 156 WP_023022084.1 hypothetical protein -
  N597_RS00305 (N597_00320) - 57731..59215 (-) 1485 WP_023022085.1 DUF1846 domain-containing protein -
  N597_RS00310 (N597_00325) pepA 59376..60440 (-) 1065 WP_023022086.1 glutamyl aminopeptidase -
  N597_RS00315 (N597_00330) - 60588..60878 (+) 291 WP_023022087.1 DUF4651 domain-containing protein -
  N597_RS00320 (N597_00335) - 60875..61192 (+) 318 WP_023022088.1 thioredoxin family protein -
  N597_RS00325 (N597_00340) ytpR 61207..61833 (+) 627 WP_023022089.1 YtpR family tRNA-binding protein -
  N597_RS00330 (N597_00345) ssbB/cilA 62070..62465 (+) 396 WP_023022090.1 single-stranded DNA-binding protein Machinery gene
  N597_RS00335 (N597_00350) - 62685..63671 (+) 987 WP_023022091.1 substrate-binding domain-containing protein -
  N597_RS00340 (N597_00355) - 63671..64990 (+) 1320 WP_023022092.1 sensor histidine kinase -
  N597_RS00345 (N597_00360) - 64987..65673 (+) 687 WP_023022093.1 response regulator transcription factor -
  N597_RS00350 (N597_00365) - 65670..66977 (+) 1308 WP_023022094.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14704.68 Da        Isoelectric Point: 5.9328

>NTDB_id=62880 N597_RS00330 WP_023022090.1 62070..62465(+) (ssbB/cilA) [Streptococcus ilei]
MYNKVILIGRLVADPELHKTNTDKSVARATLAVNRRYKDQNGEREADFITLVVWGKLAETLVSYANKGSLLSVDGELRTR
RYEKNGTTQYVTEVLCQGFQLLESRAQRAMRANGAGGDLADLILEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=62880 N597_RS00330 WP_023022090.1 62070..62465(+) (ssbB/cilA) [Streptococcus ilei]
ATGTACAATAAAGTAATTTTAATCGGGCGCCTAGTGGCAGACCCAGAGCTTCATAAGACCAATACAGACAAGTCCGTTGC
GCGTGCGACCCTGGCTGTCAATCGGCGTTACAAGGATCAAAATGGCGAGCGTGAGGCGGACTTTATCACCCTAGTGGTCT
GGGGGAAATTAGCAGAGACCCTTGTATCCTATGCCAACAAGGGGAGCTTGCTCTCAGTAGATGGCGAGCTTCGAACCAGA
CGTTATGAGAAGAATGGGACGACCCAATATGTGACAGAAGTGCTCTGTCAAGGCTTCCAGCTTTTAGAAAGTCGTGCTCA
ACGAGCGATGCGGGCCAATGGGGCAGGAGGGGATCTAGCAGATCTGATCCTCGAAGAGGAAGAACTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

82.443

100

0.824
  ssbB/cilA Streptococcus mitis NCTC 12261

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae Rx1

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae D39

81.679

100

0.817
  ssbB/cilA Streptococcus pneumoniae R6

81.679

100

0.817
  ssbB/cilA Streptococcus mitis SK321

81.679

100

0.817
  ssbA Streptococcus mutans UA159

71.756

100

0.718
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

60.909

83.969

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

47.321

85.496

0.405

Multiple sequence alignment