Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LO002_RS17485 Genome accession   NZ_CP087321
Coordinates   3612944..3613762 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain OC043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3607944..3618762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO002_RS17470 pilE 3608161..3608586 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  LO002_RS17475 pilY2 3608583..3609065 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  LO002_RS17480 pilY1 3609078..3612932 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  LO002_RS17485 pilX 3612944..3613762 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LO002_RS17490 pilW 3613759..3614760 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  LO002_RS17495 pilV 3614761..3615321 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  LO002_RS17500 fimU 3615315..3615788 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LO002_RS17505 ispH 3615958..3616908 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LO002_RS17510 gmk 3617031..3617660 (+) 630 WP_000015937.1 guanylate kinase -
  LO002_RS17515 rpoZ 3617733..3618011 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LO002_RS17520 - 3618050..3618179 (+) 130 Protein_3413 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=628706 LO002_RS17485 WP_000149374.1 3612944..3613762(-) (pilX) [Acinetobacter baumannii strain OC043]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=628706 LO002_RS17485 WP_000149374.1 3612944..3613762(-) (pilX) [Acinetobacter baumannii strain OC043]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993