Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LO014_RS16950 Genome accession   NZ_CP087300
Coordinates   3381193..3381627 (-) Length   144 a.a.
NCBI ID   WP_049590825.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OC061     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3376193..3386627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LO014_RS16930 - 3376228..3377393 (+) 1166 WP_085940844.1 IS3-like element ISAba22 family transposase -
  LO014_RS16935 bfr 3377582..3378046 (+) 465 WP_000678123.1 bacterioferritin -
  LO014_RS16940 - 3378089..3379717 (-) 1629 WP_004742160.1 PglL family O-oligosaccharyltransferase -
  LO014_RS16945 - 3379824..3381134 (-) 1311 WP_049590826.1 O-antigen ligase -
  LO014_RS16950 pilA 3381193..3381627 (-) 435 WP_049590825.1 pilin Machinery gene
  LO014_RS16955 - 3381971..3382531 (-) 561 WP_196255979.1 TPM domain-containing protein -
  LO014_RS16960 - 3382525..3383604 (-) 1080 WP_258583674.1 YgcG family protein -
  LO014_RS16965 - 3383626..3384216 (-) 591 WP_000846931.1 LemA family protein -
  LO014_RS16970 - 3384347..3385234 (-) 888 WP_030423574.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 14890.06 Da        Isoelectric Point: 8.1089

>NTDB_id=628472 LO014_RS16950 WP_049590825.1 3381193..3381627(-) (pilA) [Acinetobacter baumannii strain OC061]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVSTGLADITAGKTNAETKLAEGLTAALTDVKTLGLQESTNAC
AITAKIGTDGASNITCTLKGTSQINGKKIEWIRDADNATNGTTGAWRCKTDVAESLRPKSCGAS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=628472 LO014_RS16950 WP_049590825.1 3381193..3381627(-) (pilA) [Acinetobacter baumannii strain OC061]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCGATTGCGAT
CCCTGCTTATCAAAACTATATTGCTAAGTCACAAGTAAGTACTGGTTTGGCTGATATTACTGCTGGTAAGACAAATGCAG
AAACTAAATTAGCAGAAGGTTTAACTGCGGCATTAACTGATGTAAAAACTTTAGGCTTACAAGAATCTACGAATGCTTGT
GCTATTACAGCCAAGATTGGAACTGATGGTGCAAGTAATATTACTTGTACATTGAAAGGTACATCACAAATTAATGGCAA
AAAAATTGAATGGATCCGTGATGCAGATAATGCTACAAATGGTACGACAGGTGCATGGCGCTGTAAAACTGATGTAGCCG
AAAGCTTACGTCCTAAATCATGTGGTGCTTCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

53.741

100

0.549
  pilA Pseudomonas aeruginosa PAK

42.767

100

0.472
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.966

100

0.465
  pilA Vibrio cholerae strain A1552

44.966

100

0.465
  pilA Vibrio cholerae C6706

44.966

100

0.465
  pilA/pilAI Pseudomonas stutzeri DSM 10701

45.07

98.611

0.444
  comP Acinetobacter baylyi ADP1

41.333

100

0.431
  pilA/pilAII Pseudomonas stutzeri DSM 10701

42.553

97.917

0.417
  pilA Vibrio campbellii strain DS40M4

37.821

100

0.41
  pilA Vibrio parahaemolyticus RIMD 2210633

44

86.806

0.382