Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY68_RS27315 Genome accession   NZ_CP087205
Coordinates   6102882..6104099 (+) Length   405 a.a.
NCBI ID   WP_265040954.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6097882..6109099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY68_RS27295 (LOY68_27270) - 6099333..6099629 (+) 297 WP_265040950.1 DUF2845 domain-containing protein -
  LOY68_RS27300 (LOY68_27275) - 6099873..6100220 (-) 348 WP_163911782.1 BON domain-containing protein -
  LOY68_RS27305 (LOY68_27280) - 6100552..6100953 (-) 402 WP_265040952.1 pilin -
  LOY68_RS27310 (LOY68_27285) pilB 6101179..6102879 (+) 1701 WP_265040953.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOY68_RS27315 (LOY68_27290) pilC 6102882..6104099 (+) 1218 WP_265040954.1 type II secretion system F family protein Machinery gene
  LOY68_RS27320 (LOY68_27295) pilD 6104101..6104973 (+) 873 WP_265040955.1 prepilin peptidase Machinery gene
  LOY68_RS27325 (LOY68_27300) coaE 6104970..6105593 (+) 624 WP_265040957.1 dephospho-CoA kinase -
  LOY68_RS27330 (LOY68_27305) yacG 6105590..6105790 (+) 201 WP_054051315.1 DNA gyrase inhibitor YacG -
  LOY68_RS27335 (LOY68_27310) - 6105813..6106028 (-) 216 WP_054051316.1 hypothetical protein -
  LOY68_RS27340 (LOY68_27315) - 6106092..6106781 (-) 690 WP_054051318.1 energy-coupling factor ABC transporter permease -
  LOY68_RS27345 (LOY68_27320) - 6106916..6107542 (+) 627 WP_008154887.1 DUF1780 domain-containing protein -
  LOY68_RS27350 (LOY68_27325) - 6107539..6108066 (+) 528 WP_265040961.1 MOSC domain-containing protein -
  LOY68_RS27355 (LOY68_27330) - 6108121..6108294 (+) 174 WP_054051322.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44378.37 Da        Isoelectric Point: 10.0432

>NTDB_id=628127 LOY68_RS27315 WP_265040954.1 6102882..6104099(+) (pilC) [Pseudomonas sp. B21-053]
MAVKAAKISVYAWEGTDKKGTKMTGELSGQNPALIKAQLRKQGINPGKVRKKSASIFSLGKRIKAQDISLFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EQLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFKTVFAGFGAELPSFTLMVINLSEFMQEWWWLMLGALIAAIFGFR
RAMKKSQPFRDRMDTWLLKLPLVGALMYKSAVARYARTLSTTFAAGVPLVDALESVAGATGNIVFKRAVLRIKQDVSTGM
QLNFAMRTSGIFPNMAIQMAAIGEESGSLDDMLDKVASFYEDEVDNMVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=628127 LOY68_RS27315 WP_265040954.1 6102882..6104099(+) (pilC) [Pseudomonas sp. B21-053]
ATGGCGGTCAAGGCAGCAAAAATCAGCGTGTACGCCTGGGAAGGCACGGACAAGAAAGGCACGAAAATGACCGGCGAGTT
GAGCGGTCAAAACCCGGCGCTGATCAAGGCGCAATTGCGCAAGCAAGGGATCAACCCGGGCAAGGTGCGCAAGAAATCCG
CGTCGATTTTCAGCCTGGGCAAACGCATCAAGGCCCAGGACATTTCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCTGGTGTGCCGCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGACAACCCGGCCATGCGCAAACTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCGGGCAACAGCTTCGCCGCGTCCCTGCGCAAGAAGCCGCAGTATTTCGACGAGTTGTACT
GCAACCTGGTGGATGCCGGTGAACAGGCCGGCGCACTCGATACCCTGCTGGATCGGGTCGCCACTTATAAGGAAAAGAGC
GAACAGCTCAAGGCCAAGATCAAGAAGGCCATGACCTATCCGCTGGCCGTGGTGTTTGTCGCGATCATCGTCACCGGGAT
TCTGCTGGTCAAAGTGGTGCCGCAATTCAAGACGGTGTTCGCCGGGTTTGGCGCCGAGCTGCCGTCCTTTACCCTGATGG
TGATCAACCTGTCGGAGTTCATGCAGGAGTGGTGGTGGCTGATGCTCGGCGCGCTGATCGCCGCGATCTTCGGTTTTCGT
CGCGCAATGAAGAAGTCGCAACCCTTTCGCGACCGGATGGACACCTGGCTGCTGAAACTGCCGCTGGTGGGCGCGCTGAT
GTACAAGTCCGCCGTGGCGCGTTACGCCCGCACGCTCTCGACCACCTTCGCCGCCGGGGTGCCGCTGGTGGATGCGCTGG
AATCGGTGGCCGGCGCCACCGGCAACATCGTGTTCAAACGCGCGGTGCTGCGTATCAAGCAGGACGTCTCGACCGGCATG
CAGTTGAATTTCGCCATGCGCACCTCCGGCATCTTCCCGAACATGGCAATCCAGATGGCCGCCATCGGCGAAGAGTCGGG
TTCGCTGGACGACATGCTCGACAAGGTCGCCAGCTTCTACGAGGACGAAGTGGACAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATTATGGTAGTGCTCGGCGTTGTCGTTGGCGGGCTGGTAGTTGCGATGTACCTGCCTATTTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

73.58

100

0.736
  pilC Acinetobacter baylyi ADP1

60.539

100

0.61
  pilC Acinetobacter baumannii D1279779

60.294

100

0.607
  pilC Legionella pneumophila strain ERS1305867

53.788

97.778

0.526
  pilG Neisseria gonorrhoeae MS11

44.913

99.506

0.447
  pilG Neisseria meningitidis 44/76-A

44.169

99.506

0.44
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilC Vibrio campbellii strain DS40M4

40.887

100

0.41
  pilC Thermus thermophilus HB27

36.842

98.519

0.363