Detailed information NTG0628128

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY68_RS27320
• Genome accession: NZ_CP087205
• Coordinates: 6104101..6104973 (+)
• Length: 290 a.a.
• NCBI ID: WP_265040955.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-053
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6099101..6109973

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY68_RS27295 (LOY68_27270)	-	6099333..6099629 (+)	297	WP_265040950.1	DUF2845 domain-containing protein	-
LOY68_RS27300 (LOY68_27275)	-	6099873..6100220 (-)	348	WP_163911782.1	BON domain-containing protein	-
LOY68_RS27305 (LOY68_27280)	-	6100552..6100953 (-)	402	WP_265040952.1	pilin	-
LOY68_RS27310 (LOY68_27285)	pilB	6101179..6102879 (+)	1701	WP_265040953.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LOY68_RS27315 (LOY68_27290)	pilC	6102882..6104099 (+)	1218	WP_265040954.1	type II secretion system F family protein	Machinery gene
LOY68_RS27320 (LOY68_27295)	pilD	6104101..6104973 (+)	873	WP_265040955.1	prepilin peptidase	Machinery gene
LOY68_RS27325 (LOY68_27300)	coaE	6104970..6105593 (+)	624	WP_265040957.1	dephospho-CoA kinase	-
LOY68_RS27330 (LOY68_27305)	yacG	6105590..6105790 (+)	201	WP_054051315.1	DNA gyrase inhibitor YacG	-
LOY68_RS27335 (LOY68_27310)	-	6105813..6106028 (-)	216	WP_054051316.1	hypothetical protein	-
LOY68_RS27340 (LOY68_27315)	-	6106092..6106781 (-)	690	WP_054051318.1	energy-coupling factor ABC transporter permease	-
LOY68_RS27345 (LOY68_27320)	-	6106916..6107542 (+)	627	WP_008154887.1	DUF1780 domain-containing protein	-
LOY68_RS27350 (LOY68_27325)	-	6107539..6108066 (+)	528	WP_265040961.1	MOSC domain-containing protein	-
LOY68_RS27355 (LOY68_27330)	-	6108121..6108294 (+)	174	WP_054051322.1	DUF3094 family protein	-
LOY68_RS27360 (LOY68_27335)	-	6108355..6109653 (+)	1299	WP_054051324.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32219.56 Da
• Isoelectric Point: 7.7086

>NTDB_id=628128 LOY68_RS27320 WP_265040955.1 6104101..6104973(+) (pilD) [Pseudomonas sp. B21-053]
MPLTDYLTLYPLAFVITALVLGLLVGSFLNVVIWRLPKMLEREWRTQAHDVLGLPIETPPPTYNLMLPHSQCPHCAQKIR
AWENIPVLSYVLLRGRCSNCAAPISKRYPLTELACGLLSAFIAWQFGFGWPAGLLLVLTWGLLAMSLIDAEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVAGYLVLWSVFWLFKLITGKDGIGHGDFKLLAMLGAWGGWQVLPLTLLLSSLVG
AILGVILLRLRDAKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=628128 LOY68_RS27320 WP_265040955.1 6104101..6104973(+) (pilD) [Pseudomonas sp. B21-053]
ATGCCCTTGACCGACTACCTGACCCTCTATCCGCTGGCCTTCGTCATCACGGCGCTGGTGCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTAGTGATCTGGCGCCTGCCGAAAATGCTCGAACGGGAATGGCGAACGCAGGCTCACGACGTCCTCGGCC
TGCCCATCGAAACGCCTCCGCCGACCTACAACCTGATGCTGCCCCATTCCCAGTGCCCGCACTGCGCCCAGAAGATCCGC
GCCTGGGAAAACATTCCGGTGCTCAGTTACGTGTTGTTGCGCGGTCGCTGCTCGAACTGCGCGGCACCGATCAGCAAGCG
CTACCCACTGACCGAACTGGCCTGCGGTCTGCTTTCGGCATTCATTGCCTGGCAGTTCGGTTTCGGTTGGCCTGCCGGCC
TGCTGCTGGTGCTGACGTGGGGCCTATTGGCGATGAGCCTGATTGATGCCGAGCATCAACTGTTGCCCGATGTCCTGGTG
CTGCCGTTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCGTTGCACGATGCATTGTGGGGTGCGGT
GGCCGGTTACCTGGTGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGATCACCGGCAAGGACGGCATCGGCCATGGCGACT
TCAAGTTGTTGGCAATGCTCGGGGCCTGGGGCGGTTGGCAAGTGCTGCCGCTGACCCTCCTATTGTCATCGCTGGTAGGA
GCCATTCTCGGGGTGATTTTGCTGCGCTTGCGTGACGCGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCAAT
TGCCGGCTGGATTGCGTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.317	95.862	0.521
pilD	Vibrio campbellii strain DS40M4	52.482	97.241	0.51
pilD	Acinetobacter baumannii D1279779	49.635	94.483	0.469
pilD	Neisseria gonorrhoeae MS11	50	93.103	0.466
pilD	Acinetobacter nosocomialis M2	48.905	94.483	0.462