Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY67_RS23430 Genome accession   NZ_CP087203
Coordinates   5388591..5389808 (+) Length   405 a.a.
NCBI ID   WP_265064644.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-056     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5383591..5394808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY67_RS23410 (LOY67_23385) - 5384946..5385242 (+) 297 WP_265064640.1 DUF2845 domain-containing protein -
  LOY67_RS23415 (LOY67_23390) - 5385545..5385898 (-) 354 WP_265064641.1 BON domain-containing protein -
  LOY67_RS23420 (LOY67_23395) - 5386254..5386664 (-) 411 WP_265064642.1 pilin -
  LOY67_RS23425 (LOY67_23400) pilB 5386888..5388588 (+) 1701 WP_265064643.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOY67_RS23430 (LOY67_23405) pilC 5388591..5389808 (+) 1218 WP_265064644.1 type II secretion system F family protein Machinery gene
  LOY67_RS23435 (LOY67_23410) pilD 5389810..5390679 (+) 870 WP_265064645.1 prepilin peptidase Machinery gene
  LOY67_RS23440 (LOY67_23415) coaE 5390690..5391313 (+) 624 WP_265064646.1 dephospho-CoA kinase -
  LOY67_RS23445 (LOY67_23420) yacG 5391310..5391516 (+) 207 WP_265064647.1 DNA gyrase inhibitor YacG -
  LOY67_RS23450 (LOY67_23425) - 5391564..5392250 (-) 687 WP_265064648.1 energy-coupling factor ABC transporter permease -
  LOY67_RS23455 (LOY67_23430) - 5392579..5393205 (+) 627 WP_024779575.1 DUF1780 domain-containing protein -
  LOY67_RS23460 (LOY67_23435) - 5393307..5393480 (+) 174 WP_003185543.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44201.81 Da        Isoelectric Point: 9.8765

>NTDB_id=628068 LOY67_RS23430 WP_265064644.1 5388591..5389808(+) (pilC) [Pseudomonas sp. B21-056]
MAVKAVKTDTYTWEGKDRKGTKMSGELTGQSPALVKAQLRKQGINPDKVRKKSTSIFSKGKRIKPLDIALFTRQMATMLK
AGVPLLQAFDIIGEGFDNANMRKLVDEVKQEVAAGNSFAASLRKCPQYFDELYCNLVDAGEQAGALDTLLDRVATYKEKS
EALKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFESVFSGFGAQLPAFTLMVIGLSEFMQEWWWLLLGGVVGAFFGVK
YALKRSQGFRDWRDKWLLKLPLVGALMYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFKRAVQRIRQDVSTGM
QLNFSMRASGIFPNLAIQMTAIGEESGALDDMLDKVASFYEAEVDNLVDNLTSLMEPFIMVVLGVVVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=628068 LOY67_RS23430 WP_265064644.1 5388591..5389808(+) (pilC) [Pseudomonas sp. B21-056]
ATGGCGGTCAAGGCAGTAAAAACCGATACCTACACCTGGGAAGGCAAGGACCGCAAAGGCACAAAGATGTCCGGCGAGCT
GACCGGCCAGAGCCCGGCGCTGGTCAAGGCGCAATTGCGCAAGCAAGGGATCAACCCGGACAAGGTTCGCAAGAAATCCA
CCTCGATATTCAGCAAGGGCAAACGCATCAAGCCACTGGATATCGCCCTCTTCACCCGCCAGATGGCAACGATGCTCAAG
GCCGGTGTTCCCTTGCTGCAAGCCTTCGACATCATTGGCGAAGGCTTCGATAACGCCAACATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAAGTCGCCGCCGGCAACAGCTTTGCCGCGTCGTTGCGCAAGTGCCCGCAGTATTTCGACGAGTTGTACT
GCAACCTGGTGGACGCCGGTGAACAGGCCGGCGCCCTGGACACCCTGCTGGACCGGGTCGCGACCTACAAGGAAAAGAGC
GAAGCCCTCAAGGCCAAGATCAAGAAAGCCATGACCTATCCGACGGCCGTTGTGCTCGTCGCGGCAGTGGTTACCGGCAT
CCTGCTGGTCAAGGTGGTGCCGCAGTTCGAATCGGTGTTCTCCGGGTTCGGCGCACAACTGCCGGCTTTCACCCTGATGG
TCATCGGCCTGTCGGAGTTCATGCAGGAGTGGTGGTGGCTGCTGCTGGGCGGGGTAGTGGGCGCGTTTTTTGGCGTGAAG
TATGCGCTCAAGCGCTCCCAGGGCTTTCGTGACTGGCGCGATAAGTGGCTGCTCAAGCTGCCGCTGGTAGGCGCGCTGAT
GTACAAATCCGCCGTGGCCCGTTACGCCCGGACACTGTCCACCACCTTCGCCGCCGGCGTACCGCTGGTGGAGGCGCTGG
ACTCGGTCTCCGGTGCCACCGGCAACGTGGTGTTCAAACGTGCGGTCCAGCGCATCCGGCAGGATGTCTCAACCGGTATG
CAGTTGAATTTTTCCATGCGCGCCTCAGGCATATTCCCCAACCTGGCGATCCAGATGACCGCCATCGGCGAGGAGTCCGG
GGCACTGGACGACATGCTCGACAAGGTGGCAAGTTTCTATGAGGCCGAGGTCGACAACCTGGTGGACAACCTGACCAGCC
TGATGGAACCGTTCATCATGGTGGTCCTGGGGGTGGTCGTCGGCGGCCTGGTGGTGGCCATGTACCTGCCCATCTTTCAA
CTCGGCTCTGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.568

100

0.746
  pilC Acinetobacter baylyi ADP1

59.698

98.025

0.585
  pilC Acinetobacter baumannii D1279779

58.088

100

0.585
  pilC Legionella pneumophila strain ERS1305867

55.5

98.765

0.548
  pilC Vibrio campbellii strain DS40M4

43.35

100

0.435
  pilC Vibrio cholerae strain A1552

42.716

100

0.427
  pilG Neisseria gonorrhoeae MS11

42.537

99.259

0.422
  pilG Neisseria meningitidis 44/76-A

42.04

99.259

0.417
  pilC Thermus thermophilus HB27

38

98.765

0.375