Detailed information NTG0628069

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY67_RS23435
• Genome accession: NZ_CP087203
• Coordinates: 5389810..5390679 (+)
• Length: 289 a.a.
• NCBI ID: WP_265064645.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-056
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5384810..5395679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY67_RS23410 (LOY67_23385)	-	5384946..5385242 (+)	297	WP_265064640.1	DUF2845 domain-containing protein	-
LOY67_RS23415 (LOY67_23390)	-	5385545..5385898 (-)	354	WP_265064641.1	BON domain-containing protein	-
LOY67_RS23420 (LOY67_23395)	-	5386254..5386664 (-)	411	WP_265064642.1	pilin	-
LOY67_RS23425 (LOY67_23400)	pilB	5386888..5388588 (+)	1701	WP_265064643.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LOY67_RS23430 (LOY67_23405)	pilC	5388591..5389808 (+)	1218	WP_265064644.1	type II secretion system F family protein	Machinery gene
LOY67_RS23435 (LOY67_23410)	pilD	5389810..5390679 (+)	870	WP_265064645.1	prepilin peptidase	Machinery gene
LOY67_RS23440 (LOY67_23415)	coaE	5390690..5391313 (+)	624	WP_265064646.1	dephospho-CoA kinase	-
LOY67_RS23445 (LOY67_23420)	yacG	5391310..5391516 (+)	207	WP_265064647.1	DNA gyrase inhibitor YacG	-
LOY67_RS23450 (LOY67_23425)	-	5391564..5392250 (-)	687	WP_265064648.1	energy-coupling factor ABC transporter permease	-
LOY67_RS23455 (LOY67_23430)	-	5392579..5393205 (+)	627	WP_024779575.1	DUF1780 domain-containing protein	-
LOY67_RS23460 (LOY67_23435)	-	5393307..5393480 (+)	174	WP_003185543.1	DUF3094 domain-containing protein	-
LOY67_RS23465 (LOY67_23440)	-	5393560..5394858 (+)	1299	WP_265064649.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31910.00 Da
• Isoelectric Point: 8.0578

>NTDB_id=628069 LOY67_RS23435 WP_265064645.1 5389810..5390679(+) (pilD) [Pseudomonas sp. B21-056]
MPLTEFFVLYPLAFVLTALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAETPGPAYNLMLPHSQCIHCGHRIR
AWENIPLFSYLALRGRCSSCGTPIGRRYPLTELACGALSAFVAWHFGFGWQAALVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWIFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVVVLRIRDAPASTQIPFGPYLAIAGWIALLWGGQITDFYWHSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=628069 LOY67_RS23435 WP_265064645.1 5389810..5390679(+) (pilD) [Pseudomonas sp. B21-056]
ATGCCCCTGACCGAATTTTTCGTGCTTTACCCCCTGGCCTTCGTGCTGACGGCGTTATTGCTCGGGCTGATCGTCGGCAG
TTTCCTCAATGTCCTGGTGTGGCGCCTGCCCAAGATGCTCACCCGGGAATGGCGGCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAAACGCCCGGCCCGGCCTACAACCTGATGCTGCCTCATTCCCAGTGCATTCACTGCGGCCACCGCATTCGG
GCCTGGGAAAATATCCCGTTGTTCAGCTACCTCGCGCTGCGTGGCCGCTGTTCCAGCTGTGGCACCCCGATTGGCCGGCG
TTATCCCTTGACGGAACTGGCCTGCGGCGCCCTGTCGGCCTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCCGCGC
TGGTGATGGTGCTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAGCATCAATTGCTGCCCGATACCCTGGTG
CTGCCCTTGTTGTGGCTGGGGCTGATCGTCAACAGCTTCGGGTTGTTCGTTTCATTGAACCAGGCGATGTGGGGGGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGATCTTCAAGTTGATCACCGGCAAGGAAGGCATGGGCTACGGAGACT
TCAAGCTGCTGGCGATGCTGGGAGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACGCTGCTGCTGTCATCGCTGGTGGGC
GCCGTCGTCGGGGTCGTTGTATTGCGTATACGCGATGCTCCCGCCTCGACACAGATCCCCTTTGGGCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCACTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.113	98.27	0.512
pilD	Vibrio campbellii strain DS40M4	49.825	98.616	0.491
pilD	Neisseria gonorrhoeae MS11	45.993	99.308	0.457
pilD	Acinetobacter baumannii D1279779	45.423	98.27	0.446
pilD	Acinetobacter nosocomialis M2	45.423	98.27	0.446