Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOY36_RS24255 Genome accession   NZ_CP087193
Coordinates   5414498..5415715 (+) Length   405 a.a.
NCBI ID   WP_019650988.1    Uniprot ID   -
Organism   Pseudomonas sp. B21-019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5409498..5420715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY36_RS24235 (LOY36_24195) - 5410851..5411147 (+) 297 WP_007938996.1 DUF2845 domain-containing protein -
  LOY36_RS24240 (LOY36_24200) - 5411475..5411831 (-) 357 WP_019650991.1 BON domain-containing protein -
  LOY36_RS24245 (LOY36_24205) - 5412158..5412568 (-) 411 WP_019650990.1 pilin -
  LOY36_RS24250 (LOY36_24210) pilB 5412795..5414495 (+) 1701 WP_258671184.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOY36_RS24255 (LOY36_24215) pilC 5414498..5415715 (+) 1218 WP_019650988.1 type II secretion system F family protein Machinery gene
  LOY36_RS24260 (LOY36_24220) pilD 5415717..5416589 (+) 873 WP_258671185.1 A24 family peptidase Machinery gene
  LOY36_RS24265 (LOY36_24225) coaE 5416586..5417209 (+) 624 WP_026346004.1 dephospho-CoA kinase -
  LOY36_RS24270 (LOY36_24230) yacG 5417206..5417406 (+) 201 WP_007938961.1 DNA gyrase inhibitor YacG -
  LOY36_RS24275 (LOY36_24235) - 5417416..5417631 (-) 216 WP_007938959.1 hypothetical protein -
  LOY36_RS24280 (LOY36_24240) - 5417695..5418384 (-) 690 WP_258671186.1 energy-coupling factor ABC transporter permease -
  LOY36_RS24285 (LOY36_24245) - 5419272..5419514 (+) 243 WP_018930181.1 DUF2790 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44080.90 Da        Isoelectric Point: 9.9233

>NTDB_id=627794 LOY36_RS24255 WP_019650988.1 5414498..5415715(+) (pilC) [Pseudomonas sp. B21-019]
MAVKAAKISVYAWEGTDRKGAKMTGELTGQNPALIKAQLRKQGINPGKVRKKSTSIFSAGKRIKPLDIALFTRQMATMMK
AGVPLLQSFEIIGEGFDNPNMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAMTYPLAVVFVAIIVTGILLVKVVPQFQSVFSGFGAELPAFTVMVIGLSEFMQDWWWMILGVLAGGIFGLR
HAFKNSPGFRDRTDTWLLKLPLVGALMYKSAVARYARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIKQDVSTGM
QLNFSMRTSGIFPTMAIQMTAIGEESGALDDMLDKVASFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=627794 LOY36_RS24255 WP_019650988.1 5414498..5415715(+) (pilC) [Pseudomonas sp. B21-019]
ATGGCGGTCAAAGCAGCGAAAATCAGCGTGTATGCCTGGGAAGGCACGGATCGCAAAGGTGCGAAAATGACCGGCGAGTT
GACCGGACAAAATCCTGCGCTGATCAAGGCCCAGTTGCGCAAGCAGGGCATCAACCCGGGCAAGGTGCGGAAAAAGTCCA
CGTCCATTTTCAGTGCCGGTAAGCGCATCAAACCCTTGGACATTGCCCTGTTTACCCGGCAGATGGCGACCATGATGAAA
GCCGGCGTACCGCTGCTGCAATCGTTCGAGATCATCGGCGAAGGCTTTGATAACCCGAACATGCGCAAGCTGGTGGACGA
GGTGAAACAGGAAGTCGCGGCCGGTAACAGCTTCGCCGCGGCCCTGCGCAAAAAGCCCCAGTATTTCGACGAGCTGTACT
GCAACCTGGTGGACGCCGGCGAGCAGGCCGGTGCCCTGGATACCTTGCTGGAACGGGTGGCGACCTACAAGGAAAAGAGC
GAAAGCCTCAAGGCCAAGATCAAGAAAGCCATGACCTACCCGCTGGCGGTGGTGTTCGTTGCAATCATTGTGACCGGCAT
TCTGCTGGTCAAGGTTGTGCCGCAGTTCCAGTCGGTATTCTCGGGGTTCGGCGCCGAACTGCCGGCGTTCACCGTGATGG
TCATCGGCTTGTCGGAGTTCATGCAGGACTGGTGGTGGATGATACTCGGCGTGCTGGCTGGGGGGATCTTCGGCCTGCGC
CATGCCTTCAAGAATTCCCCGGGTTTTCGCGACCGGACGGACACCTGGTTGCTGAAACTGCCGCTGGTTGGCGCGCTCAT
GTACAAGTCCGCCGTGGCCCGATACGCCCGCACCCTGTCGACGACGTTTGCCGCCGGCGTGCCACTGGTCGAAGCCCTGG
AGTCAGTGGCGGGCGCGACCGGCAATATCGTGTTCAAGCGAGCGGTGTTGCGCATCAAGCAGGACGTTTCGACCGGCATG
CAGCTGAATTTTTCCATGCGTACCTCCGGCATCTTTCCGACCATGGCGATCCAGATGACGGCCATTGGCGAAGAGTCCGG
TGCGCTGGACGACATGCTCGACAAGGTCGCGAGTTTCTACGAGGCCGAGGTGGACAACATGGTCGATAACCTGACCAGCC
TGATGGAGCCATTCATCATGGTGGTGCTGGGTGTTATCGTCGGCGGGCTGGTGGTTGCAATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.568

100

0.746
  pilC Acinetobacter baylyi ADP1

61.029

100

0.615
  pilC Acinetobacter baumannii D1279779

59.559

100

0.6
  pilC Legionella pneumophila strain ERS1305867

53.535

97.778

0.523
  pilG Neisseria gonorrhoeae MS11

42.537

99.259

0.422
  pilC Vibrio cholerae strain A1552

42.929

97.778

0.42
  pilG Neisseria meningitidis 44/76-A

42.04

99.259

0.417
  pilC Vibrio campbellii strain DS40M4

40.887

100

0.41
  pilC Thermus thermophilus HB27

37.905

99.012

0.375