Detailed information NTG0627795

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LOY36_RS24260
• Genome accession: NZ_CP087193
• Coordinates: 5415717..5416589 (+)
• Length: 290 a.a.
• NCBI ID: WP_258671185.1
• Uniprot ID: -
• Organism: Pseudomonas sp. B21-019
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5410717..5421589

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY36_RS24235 (LOY36_24195)	-	5410851..5411147 (+)	297	WP_007938996.1	DUF2845 domain-containing protein	-
LOY36_RS24240 (LOY36_24200)	-	5411475..5411831 (-)	357	WP_019650991.1	BON domain-containing protein	-
LOY36_RS24245 (LOY36_24205)	-	5412158..5412568 (-)	411	WP_019650990.1	pilin	-
LOY36_RS24250 (LOY36_24210)	pilB	5412795..5414495 (+)	1701	WP_258671184.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LOY36_RS24255 (LOY36_24215)	pilC	5414498..5415715 (+)	1218	WP_019650988.1	type II secretion system F family protein	Machinery gene
LOY36_RS24260 (LOY36_24220)	pilD	5415717..5416589 (+)	873	WP_258671185.1	A24 family peptidase	Machinery gene
LOY36_RS24265 (LOY36_24225)	coaE	5416586..5417209 (+)	624	WP_026346004.1	dephospho-CoA kinase	-
LOY36_RS24270 (LOY36_24230)	yacG	5417206..5417406 (+)	201	WP_007938961.1	DNA gyrase inhibitor YacG	-
LOY36_RS24275 (LOY36_24235)	-	5417416..5417631 (-)	216	WP_007938959.1	hypothetical protein	-
LOY36_RS24280 (LOY36_24240)	-	5417695..5418384 (-)	690	WP_258671186.1	energy-coupling factor ABC transporter permease	-
LOY36_RS24285 (LOY36_24245)	-	5419272..5419514 (+)	243	WP_018930181.1	DUF2790 domain-containing protein	-
LOY36_RS24290 (LOY36_24250)	-	5419524..5420792 (-)	1269	WP_258671187.1	OprD family porin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32154.36 Da
• Isoelectric Point: 7.6845

>NTDB_id=627795 LOY36_RS24260 WP_258671185.1 5415717..5416589(+) (pilD) [Pseudomonas sp. B21-019]
MSLNDFLSLNPLAFVITAGVIGLLIGSFLNVVVWRLPKMLEREWRLQAHDVLDLPAEAPGPTYNLILPHSECPHCGHRIR
VWENIPILSYLFLRGRCSSCAAPISKRYPLTELACGLLSAFVAWHFGFGWQACMVLVLSWGLLAMSLIDAEHQLLPDVLV
MPLMWLGLVLNSFGLFVSLHDAFWGAVAGYMALWTVFWLFKLVTGKDGIGYGDFKLLAMLGAWGGWQILPMTILLSSLVG
AILGVILLRLRDAKTSTPLPFGPYLAIAGWIALLWGGQITGFYWQFVGLK

Nucleotide

• Length: 873 bp

>NTDB_id=627795 LOY36_RS24260 WP_258671185.1 5415717..5416589(+) (pilD) [Pseudomonas sp. B21-019]
ATGTCCTTGAACGATTTTCTGAGCCTCAACCCGCTGGCCTTCGTGATTACCGCAGGGGTAATCGGCCTGCTGATCGGCAG
TTTTCTCAACGTGGTGGTCTGGCGCCTGCCGAAAATGCTTGAGCGTGAATGGCGCCTGCAGGCCCATGACGTACTGGACT
TGCCAGCCGAAGCCCCCGGCCCGACCTACAACCTGATATTGCCCCACTCCGAGTGTCCTCACTGCGGCCATCGGATTCGA
GTGTGGGAGAACATTCCAATACTCAGTTATCTGTTTTTACGTGGGCGATGCTCGAGCTGTGCAGCGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTGTCGGCGTTCGTCGCCTGGCATTTCGGTTTCGGCTGGCAGGCCTGCA
TGGTGCTGGTCCTGAGTTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGAACATCAACTGTTGCCGGACGTACTGGTG
ATGCCATTGATGTGGTTGGGACTGGTCCTCAACAGCTTCGGGCTCTTCGTATCACTGCATGACGCGTTCTGGGGCGCGGT
GGCCGGCTACATGGCGCTGTGGACAGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGACGGCATCGGTTACGGTGACT
TCAAGCTCCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCCATGACCATTCTGCTGTCATCGCTGGTAGGG
GCCATTCTCGGGGTTATTTTGCTGCGCCTGCGGGATGCGAAAACCTCGACGCCCCTACCCTTTGGACCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.482	97.241	0.51
pilD	Vibrio campbellii strain DS40M4	51.418	97.241	0.5
pilD	Acinetobacter baumannii D1279779	48.913	95.172	0.466
pilD	Acinetobacter nosocomialis M2	48.375	95.517	0.462
pilD	Neisseria gonorrhoeae MS11	48.519	93.103	0.452